DenseSegNet:基于多尺度特征融合和自适应注意机制的细胞核密集可分离网络

IF 2.5 4区 计算机科学 Q2 ENGINEERING, ELECTRICAL & ELECTRONIC
Manoj Kumar Singh, Satish Chand, Devender Kumar
{"title":"DenseSegNet:基于多尺度特征融合和自适应注意机制的细胞核密集可分离网络","authors":"Manoj Kumar Singh,&nbsp;Satish Chand,&nbsp;Devender Kumar","doi":"10.1002/ima.70103","DOIUrl":null,"url":null,"abstract":"<div>\n \n <p>In automated diagnostics and biomedical research, accurate cell nuclei segmentation is essential, but it is still challenging because of differences in cell size, complicated backgrounds, and overlapping nuclei. We introduce DenseSegNet, an advanced deep learning (DL) framework meant to solve these problems by raising segmentation accuracy and resilience. DenseSegNet improves feature extraction and multi-scale fusion using dense separable blocks, a Spatial-Channel Attention Residual Block (SCARB), and a Bidirectional Feature Pyramid Network (BiFPN). Beginning with a convolutional encoder that effectively extracts hierarchical features using dense separable blocks, the network moves. By amplifying pertinent information, and so, reducing noise, the SCARB module enhances spatial and channel-wise feature representations. As such, the BiFPN guarantees efficient semantic representation at several feature levels by supporting bidirectional multi-scale feature refining. High-resolution segmentation maps are produced in the decoder phase by feature concatenation of obtained elements and upsampling. DenseSegNet is assessed against a benchmark—the 2018 Data Science Bowl (DSB) dataset. We investigated several optimizers and loss functions to assess the architecture and learn its strength and adaptability fully. With a dice coefficient of 93.8%, an Intersection over Union (IoU) of 88.2%, a precision of 96.7%, and a recall of 91.8%, the results highlight the beneficial segmentation ability of DenseSegNet.</p>\n </div>","PeriodicalId":14027,"journal":{"name":"International Journal of Imaging Systems and Technology","volume":"35 3","pages":""},"PeriodicalIF":2.5000,"publicationDate":"2025-05-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"DenseSegNet: Densely Separable Network for Cell Nuclei Segmentation With Multi-Scale Feature Fusion and Adaptive Attention Mechanisms\",\"authors\":\"Manoj Kumar Singh,&nbsp;Satish Chand,&nbsp;Devender Kumar\",\"doi\":\"10.1002/ima.70103\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div>\\n \\n <p>In automated diagnostics and biomedical research, accurate cell nuclei segmentation is essential, but it is still challenging because of differences in cell size, complicated backgrounds, and overlapping nuclei. We introduce DenseSegNet, an advanced deep learning (DL) framework meant to solve these problems by raising segmentation accuracy and resilience. DenseSegNet improves feature extraction and multi-scale fusion using dense separable blocks, a Spatial-Channel Attention Residual Block (SCARB), and a Bidirectional Feature Pyramid Network (BiFPN). Beginning with a convolutional encoder that effectively extracts hierarchical features using dense separable blocks, the network moves. By amplifying pertinent information, and so, reducing noise, the SCARB module enhances spatial and channel-wise feature representations. As such, the BiFPN guarantees efficient semantic representation at several feature levels by supporting bidirectional multi-scale feature refining. High-resolution segmentation maps are produced in the decoder phase by feature concatenation of obtained elements and upsampling. DenseSegNet is assessed against a benchmark—the 2018 Data Science Bowl (DSB) dataset. We investigated several optimizers and loss functions to assess the architecture and learn its strength and adaptability fully. With a dice coefficient of 93.8%, an Intersection over Union (IoU) of 88.2%, a precision of 96.7%, and a recall of 91.8%, the results highlight the beneficial segmentation ability of DenseSegNet.</p>\\n </div>\",\"PeriodicalId\":14027,\"journal\":{\"name\":\"International Journal of Imaging Systems and Technology\",\"volume\":\"35 3\",\"pages\":\"\"},\"PeriodicalIF\":2.5000,\"publicationDate\":\"2025-05-02\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International Journal of Imaging Systems and Technology\",\"FirstCategoryId\":\"94\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1002/ima.70103\",\"RegionNum\":4,\"RegionCategory\":\"计算机科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"ENGINEERING, ELECTRICAL & ELECTRONIC\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International Journal of Imaging Systems and Technology","FirstCategoryId":"94","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/ima.70103","RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ENGINEERING, ELECTRICAL & ELECTRONIC","Score":null,"Total":0}
引用次数: 0

摘要

在自动诊断和生物医学研究中,准确的细胞核分割是必不可少的,但由于细胞大小的差异、复杂的背景和细胞核重叠,仍然具有挑战性。我们介绍了DenseSegNet,这是一种先进的深度学习(DL)框架,旨在通过提高分割精度和弹性来解决这些问题。DenseSegNet使用密集可分离块、空间通道注意残差块(SCARB)和双向特征金字塔网络(BiFPN)改进特征提取和多尺度融合。从卷积编码器开始,使用密集的可分离块有效地提取分层特征,网络移动。通过放大相关信息,从而降低噪声,SCARB模块增强了空间和信道特征表示。因此,通过支持双向多尺度特征精炼,BiFPN保证了在多个特征级别上有效的语义表示。高分辨率分割图是在解码器阶段通过特征拼接获得的元素和上采样产生的。DenseSegNet是根据2018年数据科学碗(DSB)数据集的基准进行评估的。我们研究了几种优化器和损失函数来评估体系结构,并充分了解其强度和适应性。dice系数为93.8%,Intersection over Union (IoU)为88.2%,准确率为96.7%,召回率为91.8%,显示了DenseSegNet良好的分割能力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
DenseSegNet: Densely Separable Network for Cell Nuclei Segmentation With Multi-Scale Feature Fusion and Adaptive Attention Mechanisms

In automated diagnostics and biomedical research, accurate cell nuclei segmentation is essential, but it is still challenging because of differences in cell size, complicated backgrounds, and overlapping nuclei. We introduce DenseSegNet, an advanced deep learning (DL) framework meant to solve these problems by raising segmentation accuracy and resilience. DenseSegNet improves feature extraction and multi-scale fusion using dense separable blocks, a Spatial-Channel Attention Residual Block (SCARB), and a Bidirectional Feature Pyramid Network (BiFPN). Beginning with a convolutional encoder that effectively extracts hierarchical features using dense separable blocks, the network moves. By amplifying pertinent information, and so, reducing noise, the SCARB module enhances spatial and channel-wise feature representations. As such, the BiFPN guarantees efficient semantic representation at several feature levels by supporting bidirectional multi-scale feature refining. High-resolution segmentation maps are produced in the decoder phase by feature concatenation of obtained elements and upsampling. DenseSegNet is assessed against a benchmark—the 2018 Data Science Bowl (DSB) dataset. We investigated several optimizers and loss functions to assess the architecture and learn its strength and adaptability fully. With a dice coefficient of 93.8%, an Intersection over Union (IoU) of 88.2%, a precision of 96.7%, and a recall of 91.8%, the results highlight the beneficial segmentation ability of DenseSegNet.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
International Journal of Imaging Systems and Technology
International Journal of Imaging Systems and Technology 工程技术-成像科学与照相技术
CiteScore
6.90
自引率
6.10%
发文量
138
审稿时长
3 months
期刊介绍: The International Journal of Imaging Systems and Technology (IMA) is a forum for the exchange of ideas and results relevant to imaging systems, including imaging physics and informatics. The journal covers all imaging modalities in humans and animals. IMA accepts technically sound and scientifically rigorous research in the interdisciplinary field of imaging, including relevant algorithmic research and hardware and software development, and their applications relevant to medical research. The journal provides a platform to publish original research in structural and functional imaging. The journal is also open to imaging studies of the human body and on animals that describe novel diagnostic imaging and analyses methods. Technical, theoretical, and clinical research in both normal and clinical populations is encouraged. Submissions describing methods, software, databases, replication studies as well as negative results are also considered. The scope of the journal includes, but is not limited to, the following in the context of biomedical research: Imaging and neuro-imaging modalities: structural MRI, functional MRI, PET, SPECT, CT, ultrasound, EEG, MEG, NIRS etc.; Neuromodulation and brain stimulation techniques such as TMS and tDCS; Software and hardware for imaging, especially related to human and animal health; Image segmentation in normal and clinical populations; Pattern analysis and classification using machine learning techniques; Computational modeling and analysis; Brain connectivity and connectomics; Systems-level characterization of brain function; Neural networks and neurorobotics; Computer vision, based on human/animal physiology; Brain-computer interface (BCI) technology; Big data, databasing and data mining.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信