Aya M. Almatary , Mohamed S.H. Salem , Mohamed R. Elnagar , Mohamed H. Aboutaleb , Tarek S. Ibrahim , Abdelrahman Hamdi , Magda A.-A. El-Sayed
{"title":"作为PDE4B抑制剂的二基氧苯基杂化物:设计、合成、体外/体内抗炎活性和计算机洞察","authors":"Aya M. Almatary , Mohamed S.H. Salem , Mohamed R. Elnagar , Mohamed H. Aboutaleb , Tarek S. Ibrahim , Abdelrahman Hamdi , Magda A.-A. El-Sayed","doi":"10.1016/j.bioorg.2025.108511","DOIUrl":null,"url":null,"abstract":"<div><div>A series of novel dialkyloxyphenyl hybrids <strong>11a-11</strong><strong>h</strong> and <strong>12a-12c</strong> were designed and synthesized as PDE4 inhibitors with anti-inflammatory activity. All compounds demonstrated nanomolar-range inhibitory activity against both PDE4B and PDE4D isoforms with notable selectivity for PDE4B. The 3,4-dimethoxyphenyl derivative <strong>11e</strong> exhibited superior PDE4B inhibitory activity (IC<sub>50</sub> = 2.82 nM), with nine-fold selectivity compared to 1.5 of Rolipram. In TNF-α inhibition assays, <strong>11e</strong> demonstrated remarkable potency (IC<sub>50</sub> = 7.20 nM), comparable to roflumilast, followed by <strong>11d</strong> (IC<sub>50</sub> = 15.54 nM) and <strong>11b</strong> (IC<sub>50</sub> = 28.52 nM). <em>In vivo</em> evaluation using LPS-induced sepsis model revealed that <strong>11e</strong> achieved the highest inhibition of both TNF-α (52.19 %) and neutrophilia (56.47 %) compared to reference compounds. Molecular docking and dynamics studies revealed that hybrids <strong>11b</strong>, <strong>11d</strong>, and <strong>11e</strong> exhibit a characteristic binding mode within the PDE4 active sites, rationalizing their activity through specific interactions, and demonstrating higher stability in the active site compared to Roflumilast.</div></div>","PeriodicalId":257,"journal":{"name":"Bioorganic Chemistry","volume":"161 ","pages":"Article 108511"},"PeriodicalIF":4.5000,"publicationDate":"2025-04-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Dialkyloxyphenyl hybrids as PDE4B inhibitors: Design, synthesis, in vitro/in vivo anti-inflammatory activity and in silico insights\",\"authors\":\"Aya M. Almatary , Mohamed S.H. Salem , Mohamed R. Elnagar , Mohamed H. Aboutaleb , Tarek S. Ibrahim , Abdelrahman Hamdi , Magda A.-A. El-Sayed\",\"doi\":\"10.1016/j.bioorg.2025.108511\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>A series of novel dialkyloxyphenyl hybrids <strong>11a-11</strong><strong>h</strong> and <strong>12a-12c</strong> were designed and synthesized as PDE4 inhibitors with anti-inflammatory activity. All compounds demonstrated nanomolar-range inhibitory activity against both PDE4B and PDE4D isoforms with notable selectivity for PDE4B. The 3,4-dimethoxyphenyl derivative <strong>11e</strong> exhibited superior PDE4B inhibitory activity (IC<sub>50</sub> = 2.82 nM), with nine-fold selectivity compared to 1.5 of Rolipram. In TNF-α inhibition assays, <strong>11e</strong> demonstrated remarkable potency (IC<sub>50</sub> = 7.20 nM), comparable to roflumilast, followed by <strong>11d</strong> (IC<sub>50</sub> = 15.54 nM) and <strong>11b</strong> (IC<sub>50</sub> = 28.52 nM). <em>In vivo</em> evaluation using LPS-induced sepsis model revealed that <strong>11e</strong> achieved the highest inhibition of both TNF-α (52.19 %) and neutrophilia (56.47 %) compared to reference compounds. Molecular docking and dynamics studies revealed that hybrids <strong>11b</strong>, <strong>11d</strong>, and <strong>11e</strong> exhibit a characteristic binding mode within the PDE4 active sites, rationalizing their activity through specific interactions, and demonstrating higher stability in the active site compared to Roflumilast.</div></div>\",\"PeriodicalId\":257,\"journal\":{\"name\":\"Bioorganic Chemistry\",\"volume\":\"161 \",\"pages\":\"Article 108511\"},\"PeriodicalIF\":4.5000,\"publicationDate\":\"2025-04-25\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Bioorganic Chemistry\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0045206825003918\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Bioorganic Chemistry","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0045206825003918","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Dialkyloxyphenyl hybrids as PDE4B inhibitors: Design, synthesis, in vitro/in vivo anti-inflammatory activity and in silico insights
A series of novel dialkyloxyphenyl hybrids 11a-11h and 12a-12c were designed and synthesized as PDE4 inhibitors with anti-inflammatory activity. All compounds demonstrated nanomolar-range inhibitory activity against both PDE4B and PDE4D isoforms with notable selectivity for PDE4B. The 3,4-dimethoxyphenyl derivative 11e exhibited superior PDE4B inhibitory activity (IC50 = 2.82 nM), with nine-fold selectivity compared to 1.5 of Rolipram. In TNF-α inhibition assays, 11e demonstrated remarkable potency (IC50 = 7.20 nM), comparable to roflumilast, followed by 11d (IC50 = 15.54 nM) and 11b (IC50 = 28.52 nM). In vivo evaluation using LPS-induced sepsis model revealed that 11e achieved the highest inhibition of both TNF-α (52.19 %) and neutrophilia (56.47 %) compared to reference compounds. Molecular docking and dynamics studies revealed that hybrids 11b, 11d, and 11e exhibit a characteristic binding mode within the PDE4 active sites, rationalizing their activity through specific interactions, and demonstrating higher stability in the active site compared to Roflumilast.
期刊介绍:
Bioorganic Chemistry publishes research that addresses biological questions at the molecular level, using organic chemistry and principles of physical organic chemistry. The scope of the journal covers a range of topics at the organic chemistry-biology interface, including: enzyme catalysis, biotransformation and enzyme inhibition; nucleic acids chemistry; medicinal chemistry; natural product chemistry, natural product synthesis and natural product biosynthesis; antimicrobial agents; lipid and peptide chemistry; biophysical chemistry; biological probes; bio-orthogonal chemistry and biomimetic chemistry.
For manuscripts dealing with synthetic bioactive compounds, the Journal requires that the molecular target of the compounds described must be known, and must be demonstrated experimentally in the manuscript. For studies involving natural products, if the molecular target is unknown, some data beyond simple cell-based toxicity studies to provide insight into the mechanism of action is required. Studies supported by molecular docking are welcome, but must be supported by experimental data. The Journal does not consider manuscripts that are purely theoretical or computational in nature.
The Journal publishes regular articles, short communications and reviews. Reviews are normally invited by Editors or Editorial Board members. Authors of unsolicited reviews should first contact an Editor or Editorial Board member to determine whether the proposed article is within the scope of the Journal.