天然环境对mrcab复合物多血红素-细胞色素链的影响。

IF 5.6 2区 化学 Q1 CHEMISTRY, MEDICINAL
Sasthi C Mandal,Ronit Sarangi,Atanu Acharya
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引用次数: 0

摘要

trcab蛋白复合物在通过外膜(OM)向外部受体输出电子方面起着至关重要的作用。这个复合体由三种蛋白质组成,含有20个血红素。最佳的蛋白质-蛋白质相互作用,因此,血红素-血红素相互作用促进通过血红素管道有效的电子转移。细胞色素MtrA主要停留在孔蛋白MtrB内,MtrB桶表面含有两个钙离子。在这项研究中,我们研究了孔蛋白结合钙离子对二血红素网络中血红素-血红素距离的影响。我们在存在和不存在mtrb结合钙离子的情况下,对om -蛋白复合物MtrCAB进行了全原子分子动力学模拟。我们观察到,当所有血红素都被氧化时,结合在MtrB上的钙离子会影响界面血红素-血红素的距离,当所有血红素都被还原时,钙离子会影响MtrC中一个血红素-血红素的距离。在这两种情况下,钙离子的缺失增加了血红素-血红素的距离,突出了钙离子在维持血红素网络中的关键作用,这对于远距离电荷传输至关重要。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Impact of Native Environment in Multiheme-Cytochrome Chains of the MtrCAB Complex.
MtrCAB protein complex plays a crucial role in exporting electrons through the outer membrane (OM) to external acceptors. This complex consists of three proteins and contains 20 hemes. Optimal protein-protein interactions and, consequently, heme-heme interactions facilitate efficient electron transfer through the conduit of hemes. The cytochrome MtrA remains mostly inside porin MtrB, and the MtrB barrel contains two calcium ions on its surface. In this study, we investigate the effect of porin-bound calcium ions on the heme-heme distances in the twenty-heme network. We performed all-atom molecular dynamics simulations of the OM-protein complex, MtrCAB, in the presence and absence of the MtrB-bound calcium ions. We observe that the calcium ions bound to MtrB affect the interfacial heme-heme distance when all of the hemes are oxidized and impact one of the heme-heme distances in MtrC when all of the hemes are reduced. In both cases, the absence of calcium ions increases the heme-heme distance, highlighting the crucial role of calcium ions in maintaining the heme network, which is essential for long-range charge transport.
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来源期刊
CiteScore
9.80
自引率
10.70%
发文量
529
审稿时长
1.4 months
期刊介绍: The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery. Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field. As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.
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