基于自注意神经网络和语义分割的晶体结构预测

IF 5.6 2区 化学 Q1 CHEMISTRY, MEDICINAL
Wuling Zhao, Minxia Zhou, Jialin Shao, Jingzheng Ren, Yusha Hu, Yulin Han* and Yi Man*, 
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引用次数: 0

摘要

新材料的开发是一个耗时且资源密集的过程。深度学习已经成为加速这一进程的一种有希望的方法。然而,由于原子相互作用的复杂性、高维性以及捕获可能晶体结构的全部多样性的综合训练数据的稀缺性,使用深度学习准确预测晶体结构仍然是一个重大挑战。本工作基于现有晶体结构数据库中包含数千个晶体学信息文件的数据集开发了一个神经网络模型。该模型采用自关注机制,通过学习和提取三维结构的局部和全局特征,将每个晶体中的原子作为点集来处理,从而提高预测精度。该方法可以实现有效的语义分割和准确的单元格预测。实验结果表明,对于含有500个原子的单晶胞,该模型的结构预测精度达到89.78%。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Crystal Structure Prediction Using a Self-Attention Neural Network and Semantic Segmentation

Crystal Structure Prediction Using a Self-Attention Neural Network and Semantic Segmentation

The development of new materials is a time-consuming and resource-intensive process. Deep learning has emerged as a promising approach to accelerate this process. However, accurately predicting crystal structures using deep learning remains a significant challenge due to the complex, high-dimensional nature of atomic interactions and the scarcity of comprehensive training data that captures the full diversity of possible crystal configurations. This work developed a neural network model based on a data set comprising thousands of crystallographic information files from existing crystal structure databases. The model incorporates a self-attention mechanism to enhance prediction accuracy by learning and extracting both local and global features of three-dimensional structures, treating the atoms in each crystal as point sets. This approach enables effective semantic segmentation and accurate unit cell prediction. Experimental results demonstrate that for unit cells containing up to 500 atoms, the model achieves a structure prediction accuracy of 89.78%.

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来源期刊
CiteScore
9.80
自引率
10.70%
发文量
529
审稿时长
1.4 months
期刊介绍: The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery. Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field. As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.
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