为美国马铃薯基因库中模棱两可的种群分配物种名称

IF 1.8 4区 农林科学 Q3 AGRONOMY
Mercedes Ames, Sean Fenstemaker, Alfonso del Rio, John Bamberg
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引用次数: 0

摘要

美国马铃薯基因库(USPG)拥有一种单一作物的种质资源,即大约6500种结瘤的茄属植物样本。尽管多年来进行了积极的分类工作,但截至2022年,USPG的80个种群仅被索引为“Solanum spp.”,这表明正确的物种名称尚不清楚。DNA标记被用来将这些种群与77个标准物种进行匹配。种群也在田间生长到成熟,并使用最新的分类键确定。基于DNA最接近匹配的物种确定得到倍性和原产国现有记录的高度支持,但分类关键字的支持程度较低(36%)。对于一些未知的种群,可以与标准的物种名称进行明确匹配。但对其他物种来说,它们的名字只是几个相似物种中最接近的一个。新的物种名称分配现在被记录在USPG种质资源信息网络(GRIN)的在线数据库中。为这些基因库资源指定一个明确的物种名称,为它们的研究和育种提供了一个实用的平台。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Assigning Species Names to Ambiguous Populations in the US Potato Genebank

The US Potato Genebank (USPG) has germplasm of a single crop, about 6,500 samples of tuber-bearing Solanum species. Despite many years of vigorous taxonomic efforts, 80 populations at USPG were indexed only as “Solanum spp.” as of 2022, indicating that the proper species name was unknown. DNA markers were used to match these populations to an array of 77 standard species. Populations were also grown to maturity in the field and determined using the latest taxonomic keys. Species determinations based on the closest DNA match were highly supported by existing records for ploidy and country of origin but only modestly by taxonomic keys (36%). For some unknown populations, a clear match to a standard species name could be made. But for others, the name assigned was only the closest of several similar species. The new species name assignments are now documented in USPG’s online database in the Germplasm Resources Information Network (GRIN). Assigning these genebank resources a definite species name provides a practical platform for deploying them for research and breeding.

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来源期刊
American Journal of Potato Research
American Journal of Potato Research 农林科学-农艺学
CiteScore
3.40
自引率
6.70%
发文量
33
审稿时长
18-36 weeks
期刊介绍: The American Journal of Potato Research (AJPR), the journal of the Potato Association of America (PAA), publishes reports of basic and applied research on the potato, Solanum spp. It presents authoritative coverage of new scientific developments in potato science, including biotechnology, breeding and genetics, crop management, disease and pest research, economics and marketing, nutrition, physiology, and post-harvest handling and quality. Recognized internationally by contributors and readership, it promotes the exchange of information on all aspects of this fast-evolving global industry.
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