Mercedes Ames, Sean Fenstemaker, Alfonso del Rio, John Bamberg
{"title":"为美国马铃薯基因库中模棱两可的种群分配物种名称","authors":"Mercedes Ames, Sean Fenstemaker, Alfonso del Rio, John Bamberg","doi":"10.1007/s12230-025-09983-9","DOIUrl":null,"url":null,"abstract":"<div><p>The US Potato Genebank (USPG) has germplasm of a single crop, about 6,500 samples of tuber-bearing <i>Solanum</i> species. Despite many years of vigorous taxonomic efforts, 80 populations at USPG were indexed only as “<i>Solanum</i> spp.” as of 2022, indicating that the proper species name was unknown. DNA markers were used to match these populations to an array of 77 standard species. Populations were also grown to maturity in the field and determined using the latest taxonomic keys. Species determinations based on the closest DNA match were highly supported by existing records for ploidy and country of origin but only modestly by taxonomic keys (36%). For some unknown populations, a clear match to a standard species name could be made. But for others, the name assigned was only the closest of several similar species. The new species name assignments are now documented in USPG’s online database in the Germplasm Resources Information Network (GRIN). Assigning these genebank resources a definite species name provides a practical platform for deploying them for research and breeding.</p></div>","PeriodicalId":7596,"journal":{"name":"American Journal of Potato Research","volume":"102 2","pages":"166 - 172"},"PeriodicalIF":1.8000,"publicationDate":"2025-02-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Assigning Species Names to Ambiguous Populations in the US Potato Genebank\",\"authors\":\"Mercedes Ames, Sean Fenstemaker, Alfonso del Rio, John Bamberg\",\"doi\":\"10.1007/s12230-025-09983-9\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>The US Potato Genebank (USPG) has germplasm of a single crop, about 6,500 samples of tuber-bearing <i>Solanum</i> species. Despite many years of vigorous taxonomic efforts, 80 populations at USPG were indexed only as “<i>Solanum</i> spp.” as of 2022, indicating that the proper species name was unknown. DNA markers were used to match these populations to an array of 77 standard species. Populations were also grown to maturity in the field and determined using the latest taxonomic keys. Species determinations based on the closest DNA match were highly supported by existing records for ploidy and country of origin but only modestly by taxonomic keys (36%). For some unknown populations, a clear match to a standard species name could be made. But for others, the name assigned was only the closest of several similar species. The new species name assignments are now documented in USPG’s online database in the Germplasm Resources Information Network (GRIN). Assigning these genebank resources a definite species name provides a practical platform for deploying them for research and breeding.</p></div>\",\"PeriodicalId\":7596,\"journal\":{\"name\":\"American Journal of Potato Research\",\"volume\":\"102 2\",\"pages\":\"166 - 172\"},\"PeriodicalIF\":1.8000,\"publicationDate\":\"2025-02-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"American Journal of Potato Research\",\"FirstCategoryId\":\"97\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s12230-025-09983-9\",\"RegionNum\":4,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"AGRONOMY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"American Journal of Potato Research","FirstCategoryId":"97","ListUrlMain":"https://link.springer.com/article/10.1007/s12230-025-09983-9","RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"AGRONOMY","Score":null,"Total":0}
Assigning Species Names to Ambiguous Populations in the US Potato Genebank
The US Potato Genebank (USPG) has germplasm of a single crop, about 6,500 samples of tuber-bearing Solanum species. Despite many years of vigorous taxonomic efforts, 80 populations at USPG were indexed only as “Solanum spp.” as of 2022, indicating that the proper species name was unknown. DNA markers were used to match these populations to an array of 77 standard species. Populations were also grown to maturity in the field and determined using the latest taxonomic keys. Species determinations based on the closest DNA match were highly supported by existing records for ploidy and country of origin but only modestly by taxonomic keys (36%). For some unknown populations, a clear match to a standard species name could be made. But for others, the name assigned was only the closest of several similar species. The new species name assignments are now documented in USPG’s online database in the Germplasm Resources Information Network (GRIN). Assigning these genebank resources a definite species name provides a practical platform for deploying them for research and breeding.
期刊介绍:
The American Journal of Potato Research (AJPR), the journal of the Potato Association of America (PAA), publishes reports of basic and applied research on the potato, Solanum spp. It presents authoritative coverage of new scientific developments in potato science, including biotechnology, breeding and genetics, crop management, disease and pest research, economics and marketing, nutrition, physiology, and post-harvest handling and quality. Recognized internationally by contributors and readership, it promotes the exchange of information on all aspects of this fast-evolving global industry.