使用基于规则的模型和基于LLNA和GPMT统计的模型进行皮肤致敏评估的共识模型

IF 3.1 Q2 TOXICOLOGY
Ryoichi Murakami , Mika Imamura , Masakazu Tateshita , Hajime Kojima , Yasushi Hikida
{"title":"使用基于规则的模型和基于LLNA和GPMT统计的模型进行皮肤致敏评估的共识模型","authors":"Ryoichi Murakami ,&nbsp;Mika Imamura ,&nbsp;Masakazu Tateshita ,&nbsp;Hajime Kojima ,&nbsp;Yasushi Hikida","doi":"10.1016/j.comtox.2025.100348","DOIUrl":null,"url":null,"abstract":"<div><div>The potential for skin sensitization has traditionally been assessed <em>in vivo</em>; however, animal welfare concerns, the trend toward restrictions, and the prohibition of the use of animals have led to a shift toward the use of non-animal alternatives such as <em>in vitro</em> and <em>in silico</em> tools. <em>In silico</em> tools mainly include rule-based and statistics-based models. Although the use of multiple computational methods is recommended, many tools consist of only one method. Furthermore, skin sensitization develops through multiple key event (KE)/adverse outcome (AO) pathways, but many <em>in silico</em> tools consist of only one KE/AO. We constructed a consensus model based on three different independent skin sensitization KE/AOs from a rule-based model, a local lymph node assay (LLNA) statistics-based model, and a guinea pig maximization test (GPMT) statistics-based model. The rule-based model is based on KE1 and considers the metabolism of pre- and pro-haptens. The LLNA and GPMT statistics-based models are based on KE4 and AO, respectively, and characterized by the use of approximately 2000 and 3000 chemicals in the training dataset, respectively. These models use larger datasets than those previously reported. The constructed consensus model was tested on chemicals labeled with human results from OECD Guideline 497. The results showed that the performance of the majority-voting model was the highest, with a balanced accuracy of 78%. The model combines a wide range of chemical spaces with high prediction accuracy.</div></div>","PeriodicalId":37651,"journal":{"name":"Computational Toxicology","volume":"34 ","pages":"Article 100348"},"PeriodicalIF":3.1000,"publicationDate":"2025-04-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Consensus model for skin sensitization assessment using a rule-based model and LLNA and GPMT statistics-based models\",\"authors\":\"Ryoichi Murakami ,&nbsp;Mika Imamura ,&nbsp;Masakazu Tateshita ,&nbsp;Hajime Kojima ,&nbsp;Yasushi Hikida\",\"doi\":\"10.1016/j.comtox.2025.100348\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>The potential for skin sensitization has traditionally been assessed <em>in vivo</em>; however, animal welfare concerns, the trend toward restrictions, and the prohibition of the use of animals have led to a shift toward the use of non-animal alternatives such as <em>in vitro</em> and <em>in silico</em> tools. <em>In silico</em> tools mainly include rule-based and statistics-based models. Although the use of multiple computational methods is recommended, many tools consist of only one method. Furthermore, skin sensitization develops through multiple key event (KE)/adverse outcome (AO) pathways, but many <em>in silico</em> tools consist of only one KE/AO. We constructed a consensus model based on three different independent skin sensitization KE/AOs from a rule-based model, a local lymph node assay (LLNA) statistics-based model, and a guinea pig maximization test (GPMT) statistics-based model. The rule-based model is based on KE1 and considers the metabolism of pre- and pro-haptens. The LLNA and GPMT statistics-based models are based on KE4 and AO, respectively, and characterized by the use of approximately 2000 and 3000 chemicals in the training dataset, respectively. These models use larger datasets than those previously reported. The constructed consensus model was tested on chemicals labeled with human results from OECD Guideline 497. The results showed that the performance of the majority-voting model was the highest, with a balanced accuracy of 78%. The model combines a wide range of chemical spaces with high prediction accuracy.</div></div>\",\"PeriodicalId\":37651,\"journal\":{\"name\":\"Computational Toxicology\",\"volume\":\"34 \",\"pages\":\"Article 100348\"},\"PeriodicalIF\":3.1000,\"publicationDate\":\"2025-04-20\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computational Toxicology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2468111325000088\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"TOXICOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational Toxicology","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2468111325000088","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"TOXICOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

皮肤致敏的潜力传统上是在体内评估的;然而,对动物福利的担忧、限制的趋势以及禁止使用动物导致了对非动物替代品的使用的转变,如体外和硅工具。计算机工具主要包括基于规则的模型和基于统计的模型。虽然建议使用多种计算方法,但许多工具仅由一种方法组成。此外,皮肤致敏通过多种关键事件(KE)/不良结果(AO)途径发展,但许多硅工具仅由一种KE/AO组成。我们从基于规则的模型、基于局部淋巴结试验(LLNA)统计的模型和基于豚鼠最大化试验(GPMT)统计的模型中构建了基于三种不同独立皮肤致敏性KE/ ao的共识模型。基于规则的模型以KE1为基础,考虑了前半抗原和前半抗原的代谢。基于LLNA和GPMT统计的模型分别基于KE4和AO,其特点是在训练数据集中分别使用了大约2000和3000种化学物质。这些模型使用的数据集比以前报道的要大。构建的共识模型在经合组织指南497中标有人类结果的化学品上进行了测试。结果表明,多数投票模型的性能最高,平衡准确率为78%。该模型结合了广泛的化学空间,具有较高的预测精度。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Consensus model for skin sensitization assessment using a rule-based model and LLNA and GPMT statistics-based models

Consensus model for skin sensitization assessment using a rule-based model and LLNA and GPMT statistics-based models
The potential for skin sensitization has traditionally been assessed in vivo; however, animal welfare concerns, the trend toward restrictions, and the prohibition of the use of animals have led to a shift toward the use of non-animal alternatives such as in vitro and in silico tools. In silico tools mainly include rule-based and statistics-based models. Although the use of multiple computational methods is recommended, many tools consist of only one method. Furthermore, skin sensitization develops through multiple key event (KE)/adverse outcome (AO) pathways, but many in silico tools consist of only one KE/AO. We constructed a consensus model based on three different independent skin sensitization KE/AOs from a rule-based model, a local lymph node assay (LLNA) statistics-based model, and a guinea pig maximization test (GPMT) statistics-based model. The rule-based model is based on KE1 and considers the metabolism of pre- and pro-haptens. The LLNA and GPMT statistics-based models are based on KE4 and AO, respectively, and characterized by the use of approximately 2000 and 3000 chemicals in the training dataset, respectively. These models use larger datasets than those previously reported. The constructed consensus model was tested on chemicals labeled with human results from OECD Guideline 497. The results showed that the performance of the majority-voting model was the highest, with a balanced accuracy of 78%. The model combines a wide range of chemical spaces with high prediction accuracy.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Computational Toxicology
Computational Toxicology Computer Science-Computer Science Applications
CiteScore
5.50
自引率
0.00%
发文量
53
审稿时长
56 days
期刊介绍: Computational Toxicology is an international journal publishing computational approaches that assist in the toxicological evaluation of new and existing chemical substances assisting in their safety assessment. -All effects relating to human health and environmental toxicity and fate -Prediction of toxicity, metabolism, fate and physico-chemical properties -The development of models from read-across, (Q)SARs, PBPK, QIVIVE, Multi-Scale Models -Big Data in toxicology: integration, management, analysis -Implementation of models through AOPs, IATA, TTC -Regulatory acceptance of models: evaluation, verification and validation -From metals, to small organic molecules to nanoparticles -Pharmaceuticals, pesticides, foods, cosmetics, fine chemicals -Bringing together the views of industry, regulators, academia, NGOs
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信