Edoardo Centofanti , Ngoc Mai Monica Huynh , Luca F. Pavarino , Simone Scacchi
{"title":"异质介质中心脏电磁干扰模型复合不连续伽辽金离散化的并行代数多网格求解方法","authors":"Edoardo Centofanti , Ngoc Mai Monica Huynh , Luca F. Pavarino , Simone Scacchi","doi":"10.1016/j.cma.2025.118001","DOIUrl":null,"url":null,"abstract":"<div><div>In this paper, we develop and numerically study algebraic multigrid (AMG) preconditioners for the cardiac EMI (Extracellular space, cell Membrane, and Intracellular space) model, a recent and biophysically detailed framework for cardiac electrophysiology. The EMI model addresses the limitations of traditional homogenized cardiac models and leverages contemporary computational power to enable high-resolution simulations at the cellular scale. Using a composite Discontinuous Galerkin (DG) discretization, we introduce an AMG-EMI solver for the three dimensional EMI model. Our investigation includes the AMG-EMI scalability performance, both weak and strong, and evaluates its numerical robustness under ischemic conditions, addressing the challenges of heterogeneous media. Numerical tests exploit state-of-the-art pre-exascale supercomputers with hybrid CPU–GPU architectures. The results indicate better scalability performance of the AMG-EMI solver on CPUs compared to GPUs. However, the best solution times achieved using GPUs are up to 40x faster than those obtained on CPUs.</div></div>","PeriodicalId":55222,"journal":{"name":"Computer Methods in Applied Mechanics and Engineering","volume":"442 ","pages":"Article 118001"},"PeriodicalIF":6.9000,"publicationDate":"2025-04-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Parallel Algebraic Multigrid Solvers for Composite Discontinuous Galerkin Discretization of the Cardiac EMI Model in Heterogeneous Media\",\"authors\":\"Edoardo Centofanti , Ngoc Mai Monica Huynh , Luca F. Pavarino , Simone Scacchi\",\"doi\":\"10.1016/j.cma.2025.118001\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>In this paper, we develop and numerically study algebraic multigrid (AMG) preconditioners for the cardiac EMI (Extracellular space, cell Membrane, and Intracellular space) model, a recent and biophysically detailed framework for cardiac electrophysiology. The EMI model addresses the limitations of traditional homogenized cardiac models and leverages contemporary computational power to enable high-resolution simulations at the cellular scale. Using a composite Discontinuous Galerkin (DG) discretization, we introduce an AMG-EMI solver for the three dimensional EMI model. Our investigation includes the AMG-EMI scalability performance, both weak and strong, and evaluates its numerical robustness under ischemic conditions, addressing the challenges of heterogeneous media. Numerical tests exploit state-of-the-art pre-exascale supercomputers with hybrid CPU–GPU architectures. The results indicate better scalability performance of the AMG-EMI solver on CPUs compared to GPUs. However, the best solution times achieved using GPUs are up to 40x faster than those obtained on CPUs.</div></div>\",\"PeriodicalId\":55222,\"journal\":{\"name\":\"Computer Methods in Applied Mechanics and Engineering\",\"volume\":\"442 \",\"pages\":\"Article 118001\"},\"PeriodicalIF\":6.9000,\"publicationDate\":\"2025-04-24\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computer Methods in Applied Mechanics and Engineering\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0045782525002737\",\"RegionNum\":1,\"RegionCategory\":\"工程技术\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"ENGINEERING, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computer Methods in Applied Mechanics and Engineering","FirstCategoryId":"5","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0045782525002737","RegionNum":1,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"ENGINEERING, MULTIDISCIPLINARY","Score":null,"Total":0}
Parallel Algebraic Multigrid Solvers for Composite Discontinuous Galerkin Discretization of the Cardiac EMI Model in Heterogeneous Media
In this paper, we develop and numerically study algebraic multigrid (AMG) preconditioners for the cardiac EMI (Extracellular space, cell Membrane, and Intracellular space) model, a recent and biophysically detailed framework for cardiac electrophysiology. The EMI model addresses the limitations of traditional homogenized cardiac models and leverages contemporary computational power to enable high-resolution simulations at the cellular scale. Using a composite Discontinuous Galerkin (DG) discretization, we introduce an AMG-EMI solver for the three dimensional EMI model. Our investigation includes the AMG-EMI scalability performance, both weak and strong, and evaluates its numerical robustness under ischemic conditions, addressing the challenges of heterogeneous media. Numerical tests exploit state-of-the-art pre-exascale supercomputers with hybrid CPU–GPU architectures. The results indicate better scalability performance of the AMG-EMI solver on CPUs compared to GPUs. However, the best solution times achieved using GPUs are up to 40x faster than those obtained on CPUs.
期刊介绍:
Computer Methods in Applied Mechanics and Engineering stands as a cornerstone in the realm of computational science and engineering. With a history spanning over five decades, the journal has been a key platform for disseminating papers on advanced mathematical modeling and numerical solutions. Interdisciplinary in nature, these contributions encompass mechanics, mathematics, computer science, and various scientific disciplines. The journal welcomes a broad range of computational methods addressing the simulation, analysis, and design of complex physical problems, making it a vital resource for researchers in the field.