DFT洞察装配[8]MCPP与[14]吡啶纳米带的氨基酸传感

IF 2.7 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS
Ahmad Khaleel AlOmari
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引用次数: 0

摘要

设计用于检测氨基酸(aa)的纳米级电子传感器的进展由于其能够实现无标签和实时检测而引起了相当大的兴趣。在这项研究中,利用密度泛函理论(DFT)计算,研究了[8]环对苯炔([8]MCPP)与[14]吡啶亚甲基桥接纳米带组装形成的[14]吡啶@[8]MCPP体系,作为甘氨酸(Gly)、丙氨酸(Ala)、苏氨酸(Thr)、亮氨酸(Leu)和天冬氨酸(Asp)五种氨基酸的电位传感器。通过前沿分子轨道(FMO)、态密度(DOS)、分子原子量子理论(QTAIM)、非共价相互作用(NCI)和电子密度差(EDD)等分析,对组装结构的传感能力进行了评价。氨基酸的存在影响了[14]吡啶@[8]MCPP复合物的能隙,其中[14]吡啶@[8]MCPP/Asp复合物的能隙变化最大(- 8.75%)。此外,QTAIM和NCI分析表明,AAs与[14]吡啶@[8]MCPP组装体的相互作用主要受范德华力(vdW)的支配。[14]吡啶@[8]MCPP/AA配合物在298 K下具有较短的恢复时间(3.47 × 10−10 ~ 1.27 × 10−6 s)和良好的传感器响应(0.09 ~ 0.17),表明该组合物可以作为检测氨基酸的有效材料。这些发现强调了组装纳米结构作为氨基酸传感应用的有价值候选者的潜力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

DFT insights into assembling [8]MCPP with [14]pyridine nanobelts for amino acid sensing

DFT insights into assembling [8]MCPP with [14]pyridine nanobelts for amino acid sensing
The progress in designing nanoscale electronic sensors for detecting amino acids (AAs) has attracted considerable interest due to their ability to enable label-free and real-time detection. In this study, the [14]pyridine@[8]MCPP system formed by assembling [8]cycloparaphenylene ([8]MCPP) with [14]pyridine methylene-bridged nanobelts was investigated using density functional theory (DFT) calculations as a potential sensor for five amino acids: glycine (Gly), alanine (Ala), threonine (Thr), leucine (Leu), and aspartic acid (Asp). The sensing capabilities of the assembled structure were evaluated through various analyses, including frontier molecular orbital (FMO), density of states (DOS), quantum theory of atoms in molecules (QTAIM), non-covalent interactions (NCI), and electron density difference (EDD). The energy gap of the [14]pyridine@[8]MCPP assembly was influenced by the presence of amino acids, with the most significant change (−8.75 %) observed in the [14]pyridine@[8]MCPP/Asp complex. Furthermore, QTAIM and NCI analyses indicated that the interactions between AAs and the [14]pyridine@[8]MCPP assembly are primarily governed by van der Waals (vdW) forces. The short recovery times (3.47 × 10−10 to 1.27 × 10−6 s) and favorable sensor responses (0.09–0.17) of the [14]pyridine@[8]MCPP/AA complexes at 298 K suggest that this assembly could serve as an effective material for detecting amino acids. These findings underscore the potential of assembled nanostructures as valuable candidates for amino acid sensing applications.
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来源期刊
Journal of molecular graphics & modelling
Journal of molecular graphics & modelling 生物-计算机:跨学科应用
CiteScore
5.50
自引率
6.90%
发文量
216
审稿时长
35 days
期刊介绍: The Journal of Molecular Graphics and Modelling is devoted to the publication of papers on the uses of computers in theoretical investigations of molecular structure, function, interaction, and design. The scope of the journal includes all aspects of molecular modeling and computational chemistry, including, for instance, the study of molecular shape and properties, molecular simulations, protein and polymer engineering, drug design, materials design, structure-activity and structure-property relationships, database mining, and compound library design. As a primary research journal, JMGM seeks to bring new knowledge to the attention of our readers. As such, submissions to the journal need to not only report results, but must draw conclusions and explore implications of the work presented. Authors are strongly encouraged to bear this in mind when preparing manuscripts. Routine applications of standard modelling approaches, providing only very limited new scientific insight, will not meet our criteria for publication. Reproducibility of reported calculations is an important issue. Wherever possible, we urge authors to enhance their papers with Supplementary Data, for example, in QSAR studies machine-readable versions of molecular datasets or in the development of new force-field parameters versions of the topology and force field parameter files. Routine applications of existing methods that do not lead to genuinely new insight will not be considered.
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