{"title":"基于机器学习的局部反应条件优化","authors":"Wenhuan Song, Honggang Sun","doi":"10.1007/s00894-025-06365-0","DOIUrl":null,"url":null,"abstract":"<div><h3>Context</h3><p>Reaction condition optimization addresses shared requirements across academia and industry, particularly in chemistry, pharmaceutical development, and fine chemical engineering. This review examines recent progress and persistent challenges in machine learning–guided optimization of localized reaction conditions, with an emphasis on three core aspects: dataset, condition representation, and optimization methods, as well as the main issues in each related stage. The review explores challenges such as dataset scarcity, data quality, and the “completeness trap” in dataset preparation stage, summarizes the limitations of current molecular representation techniques in condition representation stage, and discusses the search efficiency challenges of optimization methods in optimization stage.</p><h3>Methods</h3><p>The review analyzes the molecular representation techniques and identifies them as the primary bottleneck in advancing localized reaction condition optimization. It further examines existing optimization methodologies. Among them, Bayesian optimization and active learning emerges as the most commonly applied approaches in this field, utilizing incremental learning mechanisms and human-in-the-loop strategies to minimize experimental data requirements while mitigating molecular representation limitations. The review concludes that advancements in molecular representation techniques are essential for developing more efficient optimization methods in the future.</p></div>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"31 5","pages":""},"PeriodicalIF":2.1000,"publicationDate":"2025-04-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Local reaction condition optimization via machine learning\",\"authors\":\"Wenhuan Song, Honggang Sun\",\"doi\":\"10.1007/s00894-025-06365-0\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Context</h3><p>Reaction condition optimization addresses shared requirements across academia and industry, particularly in chemistry, pharmaceutical development, and fine chemical engineering. This review examines recent progress and persistent challenges in machine learning–guided optimization of localized reaction conditions, with an emphasis on three core aspects: dataset, condition representation, and optimization methods, as well as the main issues in each related stage. The review explores challenges such as dataset scarcity, data quality, and the “completeness trap” in dataset preparation stage, summarizes the limitations of current molecular representation techniques in condition representation stage, and discusses the search efficiency challenges of optimization methods in optimization stage.</p><h3>Methods</h3><p>The review analyzes the molecular representation techniques and identifies them as the primary bottleneck in advancing localized reaction condition optimization. It further examines existing optimization methodologies. Among them, Bayesian optimization and active learning emerges as the most commonly applied approaches in this field, utilizing incremental learning mechanisms and human-in-the-loop strategies to minimize experimental data requirements while mitigating molecular representation limitations. The review concludes that advancements in molecular representation techniques are essential for developing more efficient optimization methods in the future.</p></div>\",\"PeriodicalId\":651,\"journal\":{\"name\":\"Journal of Molecular Modeling\",\"volume\":\"31 5\",\"pages\":\"\"},\"PeriodicalIF\":2.1000,\"publicationDate\":\"2025-04-23\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Molecular Modeling\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s00894-025-06365-0\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Modeling","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s00894-025-06365-0","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Local reaction condition optimization via machine learning
Context
Reaction condition optimization addresses shared requirements across academia and industry, particularly in chemistry, pharmaceutical development, and fine chemical engineering. This review examines recent progress and persistent challenges in machine learning–guided optimization of localized reaction conditions, with an emphasis on three core aspects: dataset, condition representation, and optimization methods, as well as the main issues in each related stage. The review explores challenges such as dataset scarcity, data quality, and the “completeness trap” in dataset preparation stage, summarizes the limitations of current molecular representation techniques in condition representation stage, and discusses the search efficiency challenges of optimization methods in optimization stage.
Methods
The review analyzes the molecular representation techniques and identifies them as the primary bottleneck in advancing localized reaction condition optimization. It further examines existing optimization methodologies. Among them, Bayesian optimization and active learning emerges as the most commonly applied approaches in this field, utilizing incremental learning mechanisms and human-in-the-loop strategies to minimize experimental data requirements while mitigating molecular representation limitations. The review concludes that advancements in molecular representation techniques are essential for developing more efficient optimization methods in the future.
期刊介绍:
The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling.
Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry.
Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.