基于机器学习的局部反应条件优化

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Wenhuan Song, Honggang Sun
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引用次数: 0

摘要

反应条件优化解决了学术界和工业界的共同需求,特别是在化学、药物开发和精细化学工程领域。本文综述了机器学习引导的局部反应条件优化的最新进展和持续挑战,重点介绍了三个核心方面:数据集、条件表示和优化方法,以及每个相关阶段的主要问题。本文探讨了数据集制备阶段的数据稀缺性、数据质量和“完整性陷阱”等挑战,总结了当前分子表示技术在条件表示阶段的局限性,并讨论了优化方法在优化阶段的搜索效率挑战。方法对分子表征技术进行分析,指出分子表征技术是推进局部反应条件优化的主要瓶颈。它进一步研究了现有的优化方法。其中,贝叶斯优化和主动学习是该领域最常用的方法,它们利用增量学习机制和人在环策略来最小化实验数据需求,同时减轻分子表示的限制。综述认为,分子表征技术的进步对未来开发更有效的优化方法至关重要。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Local reaction condition optimization via machine learning

Context

Reaction condition optimization addresses shared requirements across academia and industry, particularly in chemistry, pharmaceutical development, and fine chemical engineering. This review examines recent progress and persistent challenges in machine learning–guided optimization of localized reaction conditions, with an emphasis on three core aspects: dataset, condition representation, and optimization methods, as well as the main issues in each related stage. The review explores challenges such as dataset scarcity, data quality, and the “completeness trap” in dataset preparation stage, summarizes the limitations of current molecular representation techniques in condition representation stage, and discusses the search efficiency challenges of optimization methods in optimization stage.

Methods

The review analyzes the molecular representation techniques and identifies them as the primary bottleneck in advancing localized reaction condition optimization. It further examines existing optimization methodologies. Among them, Bayesian optimization and active learning emerges as the most commonly applied approaches in this field, utilizing incremental learning mechanisms and human-in-the-loop strategies to minimize experimental data requirements while mitigating molecular representation limitations. The review concludes that advancements in molecular representation techniques are essential for developing more efficient optimization methods in the future.

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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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