{"title":"选择的神经递质抗氧化活性的机制见解","authors":"J. Sharanya , M.P. Kritik Shai , Deepa Janardanan","doi":"10.1016/j.jmgm.2025.109054","DOIUrl":null,"url":null,"abstract":"<div><div>Antioxidant activity of neurotransmitters such as dopamine, serotonin, and octopamine are studied employing density functional theory at the M062X/6-311+G∗∗ level. The hydroperoxyl radical scavenging activity of these molecules is evaluated based on thermodynamic and kinetic calculations in the gas phase as well as in solvents that mimic physiological environments. The HAT mechanism is predicted to be favored in the gas phase, whereas the SPLET mechanism is preferred in water as well as in the lipid medium. Antioxidant activity of these molecules is attributed to the presence of phenolic OH groups. Dopamine is found to be the most active antioxidant in gas as well as polar medium, whereas Serotonin exhibited higher reactivity in the lipid medium. It is identified that the nature of the environment influences the antioxidant activity of these molecules. H-bonding interaction involving the vicinal OH group of the phenoxide radical is identified to be crucial towards stabilizing the radical generated from the D2 site of dopamine, making it the most reactive site of radical attack as per the HAT mechanism. Kinetic calculations of the HAT mechanism suggest that the D2 site of dopamine has the highest rate constant both in the gas phase (1.32 × 10<sup>6</sup> L mol<sup>−1</sup> s<sup>−1</sup>) as well as in aqueous medium (9.11 × 10<sup>3</sup> L mol<sup>−1</sup> s<sup>−1</sup>), whereas the S1 site of serotonin is predicted to be the most feasible site of attack in the lipid medium (2.15 × 10<sup>5</sup> L mol<sup>−1</sup> s<sup>−1</sup>). Octopamine is found to be the least reactant molecule among the three.</div></div>","PeriodicalId":16361,"journal":{"name":"Journal of molecular graphics & modelling","volume":"138 ","pages":"Article 109054"},"PeriodicalIF":2.7000,"publicationDate":"2025-04-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Mechanistic insights on the antioxidant activity of selected neurotransmitters\",\"authors\":\"J. Sharanya , M.P. Kritik Shai , Deepa Janardanan\",\"doi\":\"10.1016/j.jmgm.2025.109054\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Antioxidant activity of neurotransmitters such as dopamine, serotonin, and octopamine are studied employing density functional theory at the M062X/6-311+G∗∗ level. The hydroperoxyl radical scavenging activity of these molecules is evaluated based on thermodynamic and kinetic calculations in the gas phase as well as in solvents that mimic physiological environments. The HAT mechanism is predicted to be favored in the gas phase, whereas the SPLET mechanism is preferred in water as well as in the lipid medium. Antioxidant activity of these molecules is attributed to the presence of phenolic OH groups. Dopamine is found to be the most active antioxidant in gas as well as polar medium, whereas Serotonin exhibited higher reactivity in the lipid medium. It is identified that the nature of the environment influences the antioxidant activity of these molecules. H-bonding interaction involving the vicinal OH group of the phenoxide radical is identified to be crucial towards stabilizing the radical generated from the D2 site of dopamine, making it the most reactive site of radical attack as per the HAT mechanism. Kinetic calculations of the HAT mechanism suggest that the D2 site of dopamine has the highest rate constant both in the gas phase (1.32 × 10<sup>6</sup> L mol<sup>−1</sup> s<sup>−1</sup>) as well as in aqueous medium (9.11 × 10<sup>3</sup> L mol<sup>−1</sup> s<sup>−1</sup>), whereas the S1 site of serotonin is predicted to be the most feasible site of attack in the lipid medium (2.15 × 10<sup>5</sup> L mol<sup>−1</sup> s<sup>−1</sup>). Octopamine is found to be the least reactant molecule among the three.</div></div>\",\"PeriodicalId\":16361,\"journal\":{\"name\":\"Journal of molecular graphics & modelling\",\"volume\":\"138 \",\"pages\":\"Article 109054\"},\"PeriodicalIF\":2.7000,\"publicationDate\":\"2025-04-11\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of molecular graphics & modelling\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1093326325001147\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMICAL RESEARCH METHODS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of molecular graphics & modelling","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1093326325001147","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0
摘要
采用密度泛函理论在M062X/6-311+G * *水平上研究了多巴胺、血清素和章鱼胺等神经递质的抗氧化活性。这些分子的羟基自由基清除活性是基于热力学和动力学计算在气相以及在模拟生理环境的溶剂评估。HAT机制预计在气相中更受青睐,而SPLET机制在水和脂质介质中更受青睐。这些分子的抗氧化活性归因于酚羟基的存在。多巴胺在气体和极性介质中是最活跃的抗氧化剂,而血清素在脂质介质中表现出更高的反应性。环境的性质影响了这些分子的抗氧化活性。涉及邻羟基苯氧基的氢键相互作用对于稳定多巴胺D2位点产生的自由基至关重要,根据HAT机制,D2位点是自由基攻击最活跃的位点。HAT机制的动力学计算表明,多巴胺的D2位点在气相(1.32 × 106 L mol−1 s−1)和水相(9.11 × 103 L mol−1 s−1)中具有最高的速率常数,而血清素的S1位点在脂质介质中被预测为最可行的攻击位点(2.15 × 105 L mol−1 s−1)。章鱼胺被发现是三种分子中最不容易反应的。
Mechanistic insights on the antioxidant activity of selected neurotransmitters
Antioxidant activity of neurotransmitters such as dopamine, serotonin, and octopamine are studied employing density functional theory at the M062X/6-311+G∗∗ level. The hydroperoxyl radical scavenging activity of these molecules is evaluated based on thermodynamic and kinetic calculations in the gas phase as well as in solvents that mimic physiological environments. The HAT mechanism is predicted to be favored in the gas phase, whereas the SPLET mechanism is preferred in water as well as in the lipid medium. Antioxidant activity of these molecules is attributed to the presence of phenolic OH groups. Dopamine is found to be the most active antioxidant in gas as well as polar medium, whereas Serotonin exhibited higher reactivity in the lipid medium. It is identified that the nature of the environment influences the antioxidant activity of these molecules. H-bonding interaction involving the vicinal OH group of the phenoxide radical is identified to be crucial towards stabilizing the radical generated from the D2 site of dopamine, making it the most reactive site of radical attack as per the HAT mechanism. Kinetic calculations of the HAT mechanism suggest that the D2 site of dopamine has the highest rate constant both in the gas phase (1.32 × 106 L mol−1 s−1) as well as in aqueous medium (9.11 × 103 L mol−1 s−1), whereas the S1 site of serotonin is predicted to be the most feasible site of attack in the lipid medium (2.15 × 105 L mol−1 s−1). Octopamine is found to be the least reactant molecule among the three.
期刊介绍:
The Journal of Molecular Graphics and Modelling is devoted to the publication of papers on the uses of computers in theoretical investigations of molecular structure, function, interaction, and design. The scope of the journal includes all aspects of molecular modeling and computational chemistry, including, for instance, the study of molecular shape and properties, molecular simulations, protein and polymer engineering, drug design, materials design, structure-activity and structure-property relationships, database mining, and compound library design.
As a primary research journal, JMGM seeks to bring new knowledge to the attention of our readers. As such, submissions to the journal need to not only report results, but must draw conclusions and explore implications of the work presented. Authors are strongly encouraged to bear this in mind when preparing manuscripts. Routine applications of standard modelling approaches, providing only very limited new scientific insight, will not meet our criteria for publication. Reproducibility of reported calculations is an important issue. Wherever possible, we urge authors to enhance their papers with Supplementary Data, for example, in QSAR studies machine-readable versions of molecular datasets or in the development of new force-field parameters versions of the topology and force field parameter files. Routine applications of existing methods that do not lead to genuinely new insight will not be considered.