探索葫芦素类似物在多形性胶质母细胞瘤中作为HMGB1抑制剂的潜力:来自各种三萜的分子对接和MD模拟的见解

IF 5.3 2区 化学 Q2 CHEMISTRY, PHYSICAL
Sucharita Patra, Ranabir Majumder, Shreya Banerjee, Mahitosh Mandal
{"title":"探索葫芦素类似物在多形性胶质母细胞瘤中作为HMGB1抑制剂的潜力:来自各种三萜的分子对接和MD模拟的见解","authors":"Sucharita Patra,&nbsp;Ranabir Majumder,&nbsp;Shreya Banerjee,&nbsp;Mahitosh Mandal","doi":"10.1016/j.molliq.2025.127555","DOIUrl":null,"url":null,"abstract":"<div><div>Glioblastoma multiforme (GBM) is the most aggressive and prevalent central nervous system (CNS) malignancy, characterized by tumor heterogeneity and poor prognosis. In GBM, tumor-induced inflammation, hypoxia, and cellular damage release damage-associated molecular patterns (DAMPs) like High Mobility Group Box 1 (HMGB1). HMGB1 exerts both tumor-promoting and tumor-suppressive effects, its functional outcome is regulated by its subcellular localization, redox state, and the immune cell infiltrate within the tumor microenvironment (TME). In our study, we focus on confirming the protumorigenic role of HMGB1 using bioinformatic tools to further validate its contribution to tumor progression. Therefore, targeted inhibition of HMGB1 seems to be a promising therapeutic strategy. Glycyrrhizin, a triterpenoid, is a known HMGB1 inhibitor. We aimed to create a more effective inhibitor by utilizing structural insights of glycyrrhizin. We used computational screening to evaluate the bioactivity of other potential triterpenoids as HMGB1 inhibitors in the context of GBM. Molecular docking and MD simulation were performed to screen the triterpenoid library. We found that triterpenoids like cucurbitacin E, F, I, and K have a higher potential to bind at the TLR4 and RAGE binding domains of HMGB1 compared to glycyrrhizin. These domains are crucial for HMGB1-receptor interactions, which enhance GBM malignancy. Moreover, drug-likeness and pharmacokinetic analyses of cucurbitacins indicated favorable therapeutic profiles. Our findings advance the discovery of novel HMGB1 inhibitors, improve GBM treatment, and establish a foundation for further validation and clinical applications.</div></div>","PeriodicalId":371,"journal":{"name":"Journal of Molecular Liquids","volume":"429 ","pages":"Article 127555"},"PeriodicalIF":5.3000,"publicationDate":"2025-04-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Exploring the potential of Cucurbitacin analogs as HMGB1 inhibitors in glioblastoma multiforme: Insights from molecular docking and MD simulation of various triterpenoids\",\"authors\":\"Sucharita Patra,&nbsp;Ranabir Majumder,&nbsp;Shreya Banerjee,&nbsp;Mahitosh Mandal\",\"doi\":\"10.1016/j.molliq.2025.127555\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Glioblastoma multiforme (GBM) is the most aggressive and prevalent central nervous system (CNS) malignancy, characterized by tumor heterogeneity and poor prognosis. In GBM, tumor-induced inflammation, hypoxia, and cellular damage release damage-associated molecular patterns (DAMPs) like High Mobility Group Box 1 (HMGB1). HMGB1 exerts both tumor-promoting and tumor-suppressive effects, its functional outcome is regulated by its subcellular localization, redox state, and the immune cell infiltrate within the tumor microenvironment (TME). In our study, we focus on confirming the protumorigenic role of HMGB1 using bioinformatic tools to further validate its contribution to tumor progression. Therefore, targeted inhibition of HMGB1 seems to be a promising therapeutic strategy. Glycyrrhizin, a triterpenoid, is a known HMGB1 inhibitor. We aimed to create a more effective inhibitor by utilizing structural insights of glycyrrhizin. We used computational screening to evaluate the bioactivity of other potential triterpenoids as HMGB1 inhibitors in the context of GBM. Molecular docking and MD simulation were performed to screen the triterpenoid library. We found that triterpenoids like cucurbitacin E, F, I, and K have a higher potential to bind at the TLR4 and RAGE binding domains of HMGB1 compared to glycyrrhizin. These domains are crucial for HMGB1-receptor interactions, which enhance GBM malignancy. Moreover, drug-likeness and pharmacokinetic analyses of cucurbitacins indicated favorable therapeutic profiles. Our findings advance the discovery of novel HMGB1 inhibitors, improve GBM treatment, and establish a foundation for further validation and clinical applications.</div></div>\",\"PeriodicalId\":371,\"journal\":{\"name\":\"Journal of Molecular Liquids\",\"volume\":\"429 \",\"pages\":\"Article 127555\"},\"PeriodicalIF\":5.3000,\"publicationDate\":\"2025-04-15\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Molecular Liquids\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0167732225007226\",\"RegionNum\":2,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Liquids","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0167732225007226","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

摘要

多形性胶质母细胞瘤(GBM)是最具侵袭性和普遍性的中枢神经系统(CNS)恶性肿瘤,具有肿瘤异质性和预后差的特点。在GBM中,肿瘤诱导的炎症、缺氧和细胞损伤释放损伤相关的分子模式(DAMPs),如高迁移率组框1 (HMGB1)。HMGB1具有促瘤和抑瘤双重作用,其功能结局受其亚细胞定位、氧化还原状态和肿瘤微环境内免疫细胞浸润(TME)的调控。在我们的研究中,我们的重点是利用生物信息学工具确认HMGB1的致瘤作用,以进一步验证其对肿瘤进展的贡献。因此,靶向抑制HMGB1似乎是一种很有前景的治疗策略。甘草酸是一种三萜,是一种已知的HMGB1抑制剂。我们的目标是利用甘草酸的结构来创造一种更有效的抑制剂。我们使用计算筛选来评估其他潜在的三萜作为HMGB1抑制剂在GBM背景下的生物活性。通过分子对接和MD模拟筛选三萜文库。我们发现,与甘草酸相比,葫芦素E、F、I和K等三萜在HMGB1的TLR4和RAGE结合域具有更高的结合潜力。这些结构域对hmgb1受体相互作用至关重要,从而增强GBM恶性肿瘤。此外,葫芦素的药物相似性和药代动力学分析表明其具有良好的治疗效果。我们的研究结果促进了新型HMGB1抑制剂的发现,改善了GBM的治疗,并为进一步的验证和临床应用奠定了基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Exploring the potential of Cucurbitacin analogs as HMGB1 inhibitors in glioblastoma multiforme: Insights from molecular docking and MD simulation of various triterpenoids

Exploring the potential of Cucurbitacin analogs as HMGB1 inhibitors in glioblastoma multiforme: Insights from molecular docking and MD simulation of various triterpenoids
Glioblastoma multiforme (GBM) is the most aggressive and prevalent central nervous system (CNS) malignancy, characterized by tumor heterogeneity and poor prognosis. In GBM, tumor-induced inflammation, hypoxia, and cellular damage release damage-associated molecular patterns (DAMPs) like High Mobility Group Box 1 (HMGB1). HMGB1 exerts both tumor-promoting and tumor-suppressive effects, its functional outcome is regulated by its subcellular localization, redox state, and the immune cell infiltrate within the tumor microenvironment (TME). In our study, we focus on confirming the protumorigenic role of HMGB1 using bioinformatic tools to further validate its contribution to tumor progression. Therefore, targeted inhibition of HMGB1 seems to be a promising therapeutic strategy. Glycyrrhizin, a triterpenoid, is a known HMGB1 inhibitor. We aimed to create a more effective inhibitor by utilizing structural insights of glycyrrhizin. We used computational screening to evaluate the bioactivity of other potential triterpenoids as HMGB1 inhibitors in the context of GBM. Molecular docking and MD simulation were performed to screen the triterpenoid library. We found that triterpenoids like cucurbitacin E, F, I, and K have a higher potential to bind at the TLR4 and RAGE binding domains of HMGB1 compared to glycyrrhizin. These domains are crucial for HMGB1-receptor interactions, which enhance GBM malignancy. Moreover, drug-likeness and pharmacokinetic analyses of cucurbitacins indicated favorable therapeutic profiles. Our findings advance the discovery of novel HMGB1 inhibitors, improve GBM treatment, and establish a foundation for further validation and clinical applications.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Journal of Molecular Liquids
Journal of Molecular Liquids 化学-物理:原子、分子和化学物理
CiteScore
10.30
自引率
16.70%
发文量
2597
审稿时长
78 days
期刊介绍: The journal includes papers in the following areas: – Simple organic liquids and mixtures – Ionic liquids – Surfactant solutions (including micelles and vesicles) and liquid interfaces – Colloidal solutions and nanoparticles – Thermotropic and lyotropic liquid crystals – Ferrofluids – Water, aqueous solutions and other hydrogen-bonded liquids – Lubricants, polymer solutions and melts – Molten metals and salts – Phase transitions and critical phenomena in liquids and confined fluids – Self assembly in complex liquids.– Biomolecules in solution The emphasis is on the molecular (or microscopic) understanding of particular liquids or liquid systems, especially concerning structure, dynamics and intermolecular forces. The experimental techniques used may include: – Conventional spectroscopy (mid-IR and far-IR, Raman, NMR, etc.) – Non-linear optics and time resolved spectroscopy (psec, fsec, asec, ISRS, etc.) – Light scattering (Rayleigh, Brillouin, PCS, etc.) – Dielectric relaxation – X-ray and neutron scattering and diffraction. Experimental studies, computer simulations (MD or MC) and analytical theory will be considered for publication; papers just reporting experimental results that do not contribute to the understanding of the fundamentals of molecular and ionic liquids will not be accepted. Only papers of a non-routine nature and advancing the field will be considered for publication.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信