{"title":"探索葫芦素类似物在多形性胶质母细胞瘤中作为HMGB1抑制剂的潜力:来自各种三萜的分子对接和MD模拟的见解","authors":"Sucharita Patra, Ranabir Majumder, Shreya Banerjee, Mahitosh Mandal","doi":"10.1016/j.molliq.2025.127555","DOIUrl":null,"url":null,"abstract":"<div><div>Glioblastoma multiforme (GBM) is the most aggressive and prevalent central nervous system (CNS) malignancy, characterized by tumor heterogeneity and poor prognosis. In GBM, tumor-induced inflammation, hypoxia, and cellular damage release damage-associated molecular patterns (DAMPs) like High Mobility Group Box 1 (HMGB1). HMGB1 exerts both tumor-promoting and tumor-suppressive effects, its functional outcome is regulated by its subcellular localization, redox state, and the immune cell infiltrate within the tumor microenvironment (TME). In our study, we focus on confirming the protumorigenic role of HMGB1 using bioinformatic tools to further validate its contribution to tumor progression. Therefore, targeted inhibition of HMGB1 seems to be a promising therapeutic strategy. Glycyrrhizin, a triterpenoid, is a known HMGB1 inhibitor. We aimed to create a more effective inhibitor by utilizing structural insights of glycyrrhizin. We used computational screening to evaluate the bioactivity of other potential triterpenoids as HMGB1 inhibitors in the context of GBM. Molecular docking and MD simulation were performed to screen the triterpenoid library. We found that triterpenoids like cucurbitacin E, F, I, and K have a higher potential to bind at the TLR4 and RAGE binding domains of HMGB1 compared to glycyrrhizin. These domains are crucial for HMGB1-receptor interactions, which enhance GBM malignancy. Moreover, drug-likeness and pharmacokinetic analyses of cucurbitacins indicated favorable therapeutic profiles. Our findings advance the discovery of novel HMGB1 inhibitors, improve GBM treatment, and establish a foundation for further validation and clinical applications.</div></div>","PeriodicalId":371,"journal":{"name":"Journal of Molecular Liquids","volume":"429 ","pages":"Article 127555"},"PeriodicalIF":5.3000,"publicationDate":"2025-04-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Exploring the potential of Cucurbitacin analogs as HMGB1 inhibitors in glioblastoma multiforme: Insights from molecular docking and MD simulation of various triterpenoids\",\"authors\":\"Sucharita Patra, Ranabir Majumder, Shreya Banerjee, Mahitosh Mandal\",\"doi\":\"10.1016/j.molliq.2025.127555\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Glioblastoma multiforme (GBM) is the most aggressive and prevalent central nervous system (CNS) malignancy, characterized by tumor heterogeneity and poor prognosis. In GBM, tumor-induced inflammation, hypoxia, and cellular damage release damage-associated molecular patterns (DAMPs) like High Mobility Group Box 1 (HMGB1). HMGB1 exerts both tumor-promoting and tumor-suppressive effects, its functional outcome is regulated by its subcellular localization, redox state, and the immune cell infiltrate within the tumor microenvironment (TME). In our study, we focus on confirming the protumorigenic role of HMGB1 using bioinformatic tools to further validate its contribution to tumor progression. Therefore, targeted inhibition of HMGB1 seems to be a promising therapeutic strategy. Glycyrrhizin, a triterpenoid, is a known HMGB1 inhibitor. We aimed to create a more effective inhibitor by utilizing structural insights of glycyrrhizin. We used computational screening to evaluate the bioactivity of other potential triterpenoids as HMGB1 inhibitors in the context of GBM. Molecular docking and MD simulation were performed to screen the triterpenoid library. We found that triterpenoids like cucurbitacin E, F, I, and K have a higher potential to bind at the TLR4 and RAGE binding domains of HMGB1 compared to glycyrrhizin. These domains are crucial for HMGB1-receptor interactions, which enhance GBM malignancy. Moreover, drug-likeness and pharmacokinetic analyses of cucurbitacins indicated favorable therapeutic profiles. Our findings advance the discovery of novel HMGB1 inhibitors, improve GBM treatment, and establish a foundation for further validation and clinical applications.</div></div>\",\"PeriodicalId\":371,\"journal\":{\"name\":\"Journal of Molecular Liquids\",\"volume\":\"429 \",\"pages\":\"Article 127555\"},\"PeriodicalIF\":5.3000,\"publicationDate\":\"2025-04-15\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Molecular Liquids\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0167732225007226\",\"RegionNum\":2,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Liquids","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0167732225007226","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
Exploring the potential of Cucurbitacin analogs as HMGB1 inhibitors in glioblastoma multiforme: Insights from molecular docking and MD simulation of various triterpenoids
Glioblastoma multiforme (GBM) is the most aggressive and prevalent central nervous system (CNS) malignancy, characterized by tumor heterogeneity and poor prognosis. In GBM, tumor-induced inflammation, hypoxia, and cellular damage release damage-associated molecular patterns (DAMPs) like High Mobility Group Box 1 (HMGB1). HMGB1 exerts both tumor-promoting and tumor-suppressive effects, its functional outcome is regulated by its subcellular localization, redox state, and the immune cell infiltrate within the tumor microenvironment (TME). In our study, we focus on confirming the protumorigenic role of HMGB1 using bioinformatic tools to further validate its contribution to tumor progression. Therefore, targeted inhibition of HMGB1 seems to be a promising therapeutic strategy. Glycyrrhizin, a triterpenoid, is a known HMGB1 inhibitor. We aimed to create a more effective inhibitor by utilizing structural insights of glycyrrhizin. We used computational screening to evaluate the bioactivity of other potential triterpenoids as HMGB1 inhibitors in the context of GBM. Molecular docking and MD simulation were performed to screen the triterpenoid library. We found that triterpenoids like cucurbitacin E, F, I, and K have a higher potential to bind at the TLR4 and RAGE binding domains of HMGB1 compared to glycyrrhizin. These domains are crucial for HMGB1-receptor interactions, which enhance GBM malignancy. Moreover, drug-likeness and pharmacokinetic analyses of cucurbitacins indicated favorable therapeutic profiles. Our findings advance the discovery of novel HMGB1 inhibitors, improve GBM treatment, and establish a foundation for further validation and clinical applications.
期刊介绍:
The journal includes papers in the following areas:
– Simple organic liquids and mixtures
– Ionic liquids
– Surfactant solutions (including micelles and vesicles) and liquid interfaces
– Colloidal solutions and nanoparticles
– Thermotropic and lyotropic liquid crystals
– Ferrofluids
– Water, aqueous solutions and other hydrogen-bonded liquids
– Lubricants, polymer solutions and melts
– Molten metals and salts
– Phase transitions and critical phenomena in liquids and confined fluids
– Self assembly in complex liquids.– Biomolecules in solution
The emphasis is on the molecular (or microscopic) understanding of particular liquids or liquid systems, especially concerning structure, dynamics and intermolecular forces. The experimental techniques used may include:
– Conventional spectroscopy (mid-IR and far-IR, Raman, NMR, etc.)
– Non-linear optics and time resolved spectroscopy (psec, fsec, asec, ISRS, etc.)
– Light scattering (Rayleigh, Brillouin, PCS, etc.)
– Dielectric relaxation
– X-ray and neutron scattering and diffraction.
Experimental studies, computer simulations (MD or MC) and analytical theory will be considered for publication; papers just reporting experimental results that do not contribute to the understanding of the fundamentals of molecular and ionic liquids will not be accepted. Only papers of a non-routine nature and advancing the field will be considered for publication.