{"title":"计算有机溶剂溶剂化自由能的原子神经网络","authors":"Sergei F. Vyboishchikov","doi":"10.1002/jcc.70104","DOIUrl":null,"url":null,"abstract":"<div>\n \n <p>This paper introduces AtomicESE, an artificial neural network for calculating solvation-free energies Δ<i>G</i>°<sub>solv</sub> of molecules in organic solvents. AtomicESE calculates Δ<i>G</i>°<sub>solv</sub> by summing atomic contributions, each evaluated by a dense neural network. This atomic network uses 13 physically relevant input features, comprising six local atomic features, two global charge-related molecular properties, and five solvent-specific properties. For neutral solutes, AtomicESE achieves an average RMSE below 0.6 kcal/mol, demonstrating strong performance across all solvent classes, with particularly high accuracy for aromatic, haloaromatic, alkane, and ketone solvents. AtomicESE also works reliably for ionic solutes.</p>\n </div>","PeriodicalId":188,"journal":{"name":"Journal of Computational Chemistry","volume":"46 11","pages":""},"PeriodicalIF":3.4000,"publicationDate":"2025-04-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Atomic Neural Network for Calculation of Solvation Free Energies in Organic Solvents\",\"authors\":\"Sergei F. Vyboishchikov\",\"doi\":\"10.1002/jcc.70104\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div>\\n \\n <p>This paper introduces AtomicESE, an artificial neural network for calculating solvation-free energies Δ<i>G</i>°<sub>solv</sub> of molecules in organic solvents. AtomicESE calculates Δ<i>G</i>°<sub>solv</sub> by summing atomic contributions, each evaluated by a dense neural network. This atomic network uses 13 physically relevant input features, comprising six local atomic features, two global charge-related molecular properties, and five solvent-specific properties. For neutral solutes, AtomicESE achieves an average RMSE below 0.6 kcal/mol, demonstrating strong performance across all solvent classes, with particularly high accuracy for aromatic, haloaromatic, alkane, and ketone solvents. AtomicESE also works reliably for ionic solutes.</p>\\n </div>\",\"PeriodicalId\":188,\"journal\":{\"name\":\"Journal of Computational Chemistry\",\"volume\":\"46 11\",\"pages\":\"\"},\"PeriodicalIF\":3.4000,\"publicationDate\":\"2025-04-19\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Computational Chemistry\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1002/jcc.70104\",\"RegionNum\":3,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Computational Chemistry","FirstCategoryId":"92","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/jcc.70104","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
Atomic Neural Network for Calculation of Solvation Free Energies in Organic Solvents
This paper introduces AtomicESE, an artificial neural network for calculating solvation-free energies ΔG°solv of molecules in organic solvents. AtomicESE calculates ΔG°solv by summing atomic contributions, each evaluated by a dense neural network. This atomic network uses 13 physically relevant input features, comprising six local atomic features, two global charge-related molecular properties, and five solvent-specific properties. For neutral solutes, AtomicESE achieves an average RMSE below 0.6 kcal/mol, demonstrating strong performance across all solvent classes, with particularly high accuracy for aromatic, haloaromatic, alkane, and ketone solvents. AtomicESE also works reliably for ionic solutes.
期刊介绍:
This distinguished journal publishes articles concerned with all aspects of computational chemistry: analytical, biological, inorganic, organic, physical, and materials. The Journal of Computational Chemistry presents original research, contemporary developments in theory and methodology, and state-of-the-art applications. Computational areas that are featured in the journal include ab initio and semiempirical quantum mechanics, density functional theory, molecular mechanics, molecular dynamics, statistical mechanics, cheminformatics, biomolecular structure prediction, molecular design, and bioinformatics.