毒理学中大型和小型实验的最佳实验设计,并应用元启发式方法研究激效

IF 3.1 Q2 TOXICOLOGY
Brian P.H. Wu , Ray-Bing Chen , Weng Kee Wong
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引用次数: 0

摘要

对于给定的设计准则,当样本量较大时,已有理论方法来构建基于模型的最优设计。其中一些方法可能适用于某些模型或设计标准,而另一些方法可能仅在限制性设置下才能找到最佳设计。当样本量较小时,基于理论的方法可能失效,优化设计也可能无法实现。我们的第一个目标是引入自然启发的元启发式来有效地找到所有类型的基于模型的最优设计。这些元启发式算法广泛应用于工程、计算机科学和人工智能,通常速度快,不需要严格的假设。对于我们的第二个目标,我们引入了一种有效的舍入方法,以基于大样本优化设计为小型实验提供可实现的精确设计。为了使毒理学家能够轻松访问各种基于模型的优化设计,无论是大型还是小型实验,我们的第三个目标是开发一个基于web的应用程序。该应用程序将生成不同类型的基于模型的优化设计,允许比较,并评估任何设计的效率。作为一个应用,我们专注于激效,并找到基于模型的设计来检测激效的存在,估计模型参数和估计阈值剂量。该方法不仅限于研究激效,而且广泛适用于设计毒理学等领域的其他研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Optimal experimental designs for big and small experiments in toxicology with applications to studying hormesis via metaheuristics
There are theoretical methods for constructing model-based optimal designs for a given design criterion when the sample size is large. Some of these methods may work for certain models or design criteria and some may find the optimal designs only under a restrictive setting. When the sample size is small, the theory-based methods may become invalid and the optimal designs may also not be implementable. Our first goal is to introduce nature-inspired metaheuristics to efficiently find all types of model-based optimal designs. These metaheuristic algorithms, widely used in engineering, computer science, and artificial intelligence, are generally fast and free of stringent assumptions. For our second goal, we introduce an efficient rounding method to produce an implementable, exact design for small-sized experiments based on large-sample optimal designs. To provide toxicologists with easy access to a variety of model-based optimal designs for both large and small experiments, our third goal is to develop a web-based app. This app will generate different types of model-based optimal designs, allow comparisons, and evaluate the efficiency of any design. As an application, we focus on hormesis and find model-based designs for detecting the presence of hormesis, estimating model parameters and estimating the threshold dose. The methodology is not restricted to studying hormesis only and is broadly applicable for designing other studies in toxicology and beyond.
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来源期刊
Computational Toxicology
Computational Toxicology Computer Science-Computer Science Applications
CiteScore
5.50
自引率
0.00%
发文量
53
审稿时长
56 days
期刊介绍: Computational Toxicology is an international journal publishing computational approaches that assist in the toxicological evaluation of new and existing chemical substances assisting in their safety assessment. -All effects relating to human health and environmental toxicity and fate -Prediction of toxicity, metabolism, fate and physico-chemical properties -The development of models from read-across, (Q)SARs, PBPK, QIVIVE, Multi-Scale Models -Big Data in toxicology: integration, management, analysis -Implementation of models through AOPs, IATA, TTC -Regulatory acceptance of models: evaluation, verification and validation -From metals, to small organic molecules to nanoparticles -Pharmaceuticals, pesticides, foods, cosmetics, fine chemicals -Bringing together the views of industry, regulators, academia, NGOs
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