S. Prince Makarios Paul, Nancy S. Abisha, Parimaladevi Duraisamy, P. Selvarengan, A. Abiram
{"title":"电场诱导VX神经毒剂结合在h-BN纳米管上的调制:计算视角","authors":"S. Prince Makarios Paul, Nancy S. Abisha, Parimaladevi Duraisamy, P. Selvarengan, A. Abiram","doi":"10.1007/s00894-025-06367-y","DOIUrl":null,"url":null,"abstract":"<div><h3>Context</h3><p>The interaction of toxic nerve agent VX with BN nanotube and nanocage is investigated in the presence of static electric field along perpendicular direction utilizing density functional theory (DFT). Accordingly, a static electric field (SEF) of strength 0.010 a.u and 0.020 a.u is passed along + <i>Y</i> and − <i>Y</i> axis and the effect on adsorption is analyzed. Upon interaction with VX, it was observed that the application of SEF in the + Y direction led to an increase interaction distance, whereas –Y SEF resulted in a decreased interaction distance between the nanotube and target gas. Among the observed complexations + Y SEF enhanced the sensing property of the nanotube by decreasing its E<sub>ads</sub> and increasing its electronic responses. Moreover, the study also confirms that BN nanotube in + Y SEF has a short recovery time of 0.37 s in average and hence can perform as an effective sensor for the detection of VX.</p><h3>Methods</h3><p>The optimizations of the structures are performed out using B3LYP-D3 functional in conjunction with 6–31 + + G(d,p) standard basis set. With the help of QTAIM analysis, parameters namely Laplacian (<span>\\({\\nabla }^{2}\\rho (r)\\)</span>), energy density value (H(r)), bond energy (E<sub>BE</sub>), and electron density ρ(r) are obtained. All the optimizations are carried out using the Gaussian 09 and visualized using gauss view and multiwfn software packages.</p></div>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"31 5","pages":""},"PeriodicalIF":2.1000,"publicationDate":"2025-04-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Electric field-induced modulation of VX nerve agent binding on h-BN nanotubes: a computational perspective\",\"authors\":\"S. Prince Makarios Paul, Nancy S. Abisha, Parimaladevi Duraisamy, P. Selvarengan, A. Abiram\",\"doi\":\"10.1007/s00894-025-06367-y\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Context</h3><p>The interaction of toxic nerve agent VX with BN nanotube and nanocage is investigated in the presence of static electric field along perpendicular direction utilizing density functional theory (DFT). Accordingly, a static electric field (SEF) of strength 0.010 a.u and 0.020 a.u is passed along + <i>Y</i> and − <i>Y</i> axis and the effect on adsorption is analyzed. Upon interaction with VX, it was observed that the application of SEF in the + Y direction led to an increase interaction distance, whereas –Y SEF resulted in a decreased interaction distance between the nanotube and target gas. Among the observed complexations + Y SEF enhanced the sensing property of the nanotube by decreasing its E<sub>ads</sub> and increasing its electronic responses. Moreover, the study also confirms that BN nanotube in + Y SEF has a short recovery time of 0.37 s in average and hence can perform as an effective sensor for the detection of VX.</p><h3>Methods</h3><p>The optimizations of the structures are performed out using B3LYP-D3 functional in conjunction with 6–31 + + G(d,p) standard basis set. With the help of QTAIM analysis, parameters namely Laplacian (<span>\\\\({\\\\nabla }^{2}\\\\rho (r)\\\\)</span>), energy density value (H(r)), bond energy (E<sub>BE</sub>), and electron density ρ(r) are obtained. All the optimizations are carried out using the Gaussian 09 and visualized using gauss view and multiwfn software packages.</p></div>\",\"PeriodicalId\":651,\"journal\":{\"name\":\"Journal of Molecular Modeling\",\"volume\":\"31 5\",\"pages\":\"\"},\"PeriodicalIF\":2.1000,\"publicationDate\":\"2025-04-14\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Molecular Modeling\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s00894-025-06367-y\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Modeling","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s00894-025-06367-y","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
摘要
本文利用密度泛函理论(DFT)研究了在垂直方向静电存在下,毒性神经毒剂VX与BN纳米管和纳米笼的相互作用。在+ Y轴和- Y轴上分别施加强度为0.010 a.u和0.020 a.u的静电场,分析了对吸附性能的影响。在与VX相互作用后,观察到在+ Y方向上应用SEF导致了相互作用距离的增加,而在-Y方向上应用SEF导致了纳米管与目标气体之间相互作用距离的减小。在观察到的配合物中,+ Y SEF通过降低其Eads和增加其电子响应来增强纳米管的传感性能。此外,该研究还证实了BN纳米管在+ Y SEF中的恢复时间较短,平均为0.37 s,因此可以作为检测VX的有效传感器。方法采用B3LYP-D3泛函结合6-31 + + G(d,p)标准基集对结构进行优化。借助QTAIM分析,得到了Laplacian (\({\nabla }^{2}\rho (r)\))、能量密度值(H(r))、键能(EBE)、电子密度ρ(r)等参数。所有的优化都是使用高斯09进行的,并使用高斯视图和多wfn软件包进行可视化。
Electric field-induced modulation of VX nerve agent binding on h-BN nanotubes: a computational perspective
Context
The interaction of toxic nerve agent VX with BN nanotube and nanocage is investigated in the presence of static electric field along perpendicular direction utilizing density functional theory (DFT). Accordingly, a static electric field (SEF) of strength 0.010 a.u and 0.020 a.u is passed along + Y and − Y axis and the effect on adsorption is analyzed. Upon interaction with VX, it was observed that the application of SEF in the + Y direction led to an increase interaction distance, whereas –Y SEF resulted in a decreased interaction distance between the nanotube and target gas. Among the observed complexations + Y SEF enhanced the sensing property of the nanotube by decreasing its Eads and increasing its electronic responses. Moreover, the study also confirms that BN nanotube in + Y SEF has a short recovery time of 0.37 s in average and hence can perform as an effective sensor for the detection of VX.
Methods
The optimizations of the structures are performed out using B3LYP-D3 functional in conjunction with 6–31 + + G(d,p) standard basis set. With the help of QTAIM analysis, parameters namely Laplacian (\({\nabla }^{2}\rho (r)\)), energy density value (H(r)), bond energy (EBE), and electron density ρ(r) are obtained. All the optimizations are carried out using the Gaussian 09 and visualized using gauss view and multiwfn software packages.
期刊介绍:
The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling.
Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry.
Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.