水合气相蛋白质的偶极取向

IF 2.9 3区 化学 Q3 CHEMISTRY, PHYSICAL
Harald Agelii, Ellen L. S. Jakobsson, Emiliano De Santis, Gideon Elfrink, Thomas Mandl, Erik G. Marklund and Carl Caleman
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引用次数: 0

摘要

在从溶液中雾化单个蛋白质时,蛋白质可能被一层水覆盖。这与使用x射线自由电子激光器进行单粒子成像(SPI)的样品递送有关。先前的研究表明,3 Å水层的存在稳定了分子结构,减少了结构的非均质性,这一点很重要,因为它有助于SPI中的结构测定。还表明,SPI将受益于在相互作用区域控制粒子取向的可能性。有人提出,通过施加与粒子的本征偶极子相互作用的直流电场,这种控制是可能的。本研究探讨了包括偶极子取向在内的SPI实验如何受到覆盖蛋白质的水合层的影响。我们通过进行气相球形蛋白与外电场相互作用的经典MD模拟来研究这一点。使用了两种水合水平:一种是完全脱溶的分子,另一种是与蛋白质表面对应的3 Åcovering水层。我们的模拟表明,与无水的情况相比,水层使分子能够在较低的场振幅和较短的时间尺度上定向。在电场强度低于2 V/nm时,我们还看到水合情况下分子结构的稳定性略高。水层的存在,加上电场,也倾向于稳定分子结构内的偶极子轴。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Dipole orientation of hydrated gas phase proteins†

Dipole orientation of hydrated gas phase proteins†

In the aerosolization of single proteins from solution, the proteins may be covered by a layer of water. This is relevant to consider in sample delivery for single particle imaging (SPI) with X-ray free-electron lasers. Previous studies suggest that the presence of a 3 Å water layer stabilizes the molecular structure and decreases structural heterogeneity which is important since it facilitates the structure determination in SPI. It has also been shown that SPI would benefit from the possibility of controlling the particle orientation in the interaction region. It has been proposed that such control would be possible by applying a DC electric field that interacts with the intrinsic dipole of the particle. This study investigates how SPI experiments, including dipole orientation, would be affected by the presence of a hydration layer covering the proteins. We investigated this by performing classical MD simulations of a globular protein in gas phase interacting with an external electric field. Two hydration levels were used: a fully desolvated molecule and one with a water layer corresponding to 3 Å covering the proteins surface. Our simulations show that a water layer enables the molecules to orient at lower field amplitudes, and on shorter time scales, as compared to the desolvated case. We also see a marginally larger stability of the molecular structure in the hydrated case at field strengths below 2 V nm−1. The presence of a water layer, in combination with an electric field, also tend to stabilize the dipole axis significantly within the molecular structure.

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来源期刊
Physical Chemistry Chemical Physics
Physical Chemistry Chemical Physics 化学-物理:原子、分子和化学物理
CiteScore
5.50
自引率
9.10%
发文量
2675
审稿时长
2.0 months
期刊介绍: Physical Chemistry Chemical Physics (PCCP) is an international journal co-owned by 19 physical chemistry and physics societies from around the world. This journal publishes original, cutting-edge research in physical chemistry, chemical physics and biophysical chemistry. To be suitable for publication in PCCP, articles must include significant innovation and/or insight into physical chemistry; this is the most important criterion that reviewers and Editors will judge against when evaluating submissions. The journal has a broad scope and welcomes contributions spanning experiment, theory, computation and data science. Topical coverage includes spectroscopy, dynamics, kinetics, statistical mechanics, thermodynamics, electrochemistry, catalysis, surface science, quantum mechanics, quantum computing and machine learning. Interdisciplinary research areas such as polymers and soft matter, materials, nanoscience, energy, surfaces/interfaces, and biophysical chemistry are welcomed if they demonstrate significant innovation and/or insight into physical chemistry. Joined experimental/theoretical studies are particularly appreciated when complementary and based on up-to-date approaches.
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