基于鹰猎物优化特征选择的高维微阵列基因表达癌症分类。

IF 2.8 3区 生物学 Q2 GENETICS & HEREDITY
Frontiers in Genetics Pub Date : 2025-03-21 eCollection Date: 2025-01-01 DOI:10.3389/fgene.2025.1528810
Swetha Dhamercherla, Damodar Reddy Edla, Suresh Dara
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引用次数: 0

摘要

微阵列基因表达数据已成为癌症分类和诊断的有力工具。然而,这些数据集的高维性给特征选择带来了巨大的挑战,导致了各种计算方法的发展。在本文中,我们利用Eagle Prey Optimization (EPO),这是一种新的基因启发方法,用于微阵列基因选择在癌症分类中。EPO从鹰的卓越狩猎策略中获得灵感,鹰在捕捉猎物时表现出无与伦比的精确度和效率。同样,我们的算法旨在识别一小部分信息基因,这些基因可以以高精度和最小冗余的方式区分癌症亚型。为了实现这一目标,EPO采用基因突变算子与EPO适应度函数相结合的方法,在多代中进化出潜在的基因子集群体。EPO的关键创新在于其纳入了专门为癌症分类任务设计的适应度函数。该函数不仅考虑了所选基因的判别能力,还考虑了它们的多样性和冗余性,确保了紧凑和信息丰富的基因子集的创建。此外,EPO结合了一种自适应突变率机制,使算法能够有效地探索搜索空间。为了验证EPO的有效性,在代表不同癌症类型的几个公开可用的微阵列数据集上进行了广泛的实验。与最先进的基因选择算法的比较分析表明,EPO在分类精度、降维和对噪声的鲁棒性方面始终优于这些方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Cancer classification in high dimensional microarray gene expressions by feature selection using eagle prey optimization.

Microarray gene expression data have emerged as powerful tools in cancer classification and diagnosis. However, the high dimensionality of these datasets presents significant challenges for feature selection, leading to the development of various computational methods. In this paper, we utilized the Eagle Prey Optimization (EPO), a novel genetically inspired approach for microarray gene selection in cancer classification. EPO draws inspiration from the remarkable hunting strategies of eagles, which exhibit unparalleled precision and efficiency in capturing prey. Similarly, our algorithm aims to identify a small subset of informative genes that can discriminate between cancer subtypes with high accuracy and minimal redundancy. To achieve this, EPO employs a combination of genetic mutation operator with EPO fitness function, to evolve a population of potential gene subsets over multiple generations. The key innovation of EPO lies in its incorporation of a fitness function specifically designed for cancer classification tasks. This function considers not only the discriminative power of selected genes but also their diversity and redundancy, ensuring the creation of compact and informative gene subsets. Moreover, EPO incorporates a mechanism for adaptive mutation rates, allowing the algorithm to explore the search space efficiently. To validate the effectiveness of EPO, extensive experiments were conducted on several publicly available microarray datasets representing different cancer types. Comparative analysis with state-of-the-art gene selection algorithms demonstrates that EPO consistently outperforms these methods in terms of classification accuracy, dimensionality reduction, and robustness to noise.

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来源期刊
Frontiers in Genetics
Frontiers in Genetics Biochemistry, Genetics and Molecular Biology-Molecular Medicine
CiteScore
5.50
自引率
8.10%
发文量
3491
审稿时长
14 weeks
期刊介绍: Frontiers in Genetics publishes rigorously peer-reviewed research on genes and genomes relating to all the domains of life, from humans to plants to livestock and other model organisms. Led by an outstanding Editorial Board of the world’s leading experts, this multidisciplinary, open-access journal is at the forefront of communicating cutting-edge research to researchers, academics, clinicians, policy makers and the public. The study of inheritance and the impact of the genome on various biological processes is well documented. However, the majority of discoveries are still to come. A new era is seeing major developments in the function and variability of the genome, the use of genetic and genomic tools and the analysis of the genetic basis of various biological phenomena.
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