Sanjay Gopi , S. Madesh , Karthikeyan Ramamurthy , Mikhlid H. Almutairi , Bader O. Almutairi , S. Karthick Raja Namasivayam , Jesu Arockiaraj
{"title":"黑籽(Nigella sativa)提取物通过激活caspase-3介导的调控途径促进LC540细胞早期和晚期凋亡:一种网络药理和分子对接方法","authors":"Sanjay Gopi , S. Madesh , Karthikeyan Ramamurthy , Mikhlid H. Almutairi , Bader O. Almutairi , S. Karthick Raja Namasivayam , Jesu Arockiaraj","doi":"10.1016/j.compbiolchem.2025.108455","DOIUrl":null,"url":null,"abstract":"<div><div>Testicular cancer continues to rise in incidence globally, and conventional chemotherapy is often associated with severe side effects that significantly impact patient’s quality of life. Identifying safer alternative therapies is becoming crucial day by day which leads to focus on naturally available phytocompounds with high bioactivity. Over the period of time, <em>Nigella sativa</em> (<em>N. sativa</em>) has garnered attention due to the presence of its rich bioactive compounds with antioxidant and anticancer properties, providing potential therapeutic benefits with minimal side effects. Since we used a network pharmacological based <em>in-silico</em> approach combined with <em>in-vitro</em> and <em>in-vivo</em> efficacy testing of <em>N. sativa</em> against testicular cancer. Molecular docking studies showed significant interactions between <em>N. sativa</em> phytochemicals and critical proteins involved in testicular and other cancer related pathways. Biochemical assays revealed decreased ROS levels with enhanced antioxidant enzyme activities such as SOD, CAT, GSH and reduced LDH levels. AO/PI staining further corroborated the enhanced apoptosis and necrosis rates in treated cells. m-RNA analysis demonstrated notable expression of inflammatory and apoptotic genes such as <em>casp-3</em> and key testicular markers such as <em>oct4, sox2</em> and other pro inflammatory cytokines. Histomorphological analysis of zebrafish testis showed decreased morphological alterations. With solid evidence of its anticancer effects through multiple biological mechanisms, including apoptosis induction, oxidative stress reduction, and oncogene suppression, these findings warrant further exploration of <em>N. sativa</em> as part of integrative cancer therapies to improve outcomes for patients with testicular cancer.</div></div>","PeriodicalId":10616,"journal":{"name":"Computational Biology and Chemistry","volume":"118 ","pages":"Article 108455"},"PeriodicalIF":2.6000,"publicationDate":"2025-04-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Black seed (Nigella sativa) extract enhances early and late apoptosis through activation of caspase-3 mediated regulatory pathway in LC540 cells: A network pharmacological and molecular docking approach\",\"authors\":\"Sanjay Gopi , S. Madesh , Karthikeyan Ramamurthy , Mikhlid H. Almutairi , Bader O. Almutairi , S. Karthick Raja Namasivayam , Jesu Arockiaraj\",\"doi\":\"10.1016/j.compbiolchem.2025.108455\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Testicular cancer continues to rise in incidence globally, and conventional chemotherapy is often associated with severe side effects that significantly impact patient’s quality of life. Identifying safer alternative therapies is becoming crucial day by day which leads to focus on naturally available phytocompounds with high bioactivity. Over the period of time, <em>Nigella sativa</em> (<em>N. sativa</em>) has garnered attention due to the presence of its rich bioactive compounds with antioxidant and anticancer properties, providing potential therapeutic benefits with minimal side effects. Since we used a network pharmacological based <em>in-silico</em> approach combined with <em>in-vitro</em> and <em>in-vivo</em> efficacy testing of <em>N. sativa</em> against testicular cancer. Molecular docking studies showed significant interactions between <em>N. sativa</em> phytochemicals and critical proteins involved in testicular and other cancer related pathways. Biochemical assays revealed decreased ROS levels with enhanced antioxidant enzyme activities such as SOD, CAT, GSH and reduced LDH levels. AO/PI staining further corroborated the enhanced apoptosis and necrosis rates in treated cells. m-RNA analysis demonstrated notable expression of inflammatory and apoptotic genes such as <em>casp-3</em> and key testicular markers such as <em>oct4, sox2</em> and other pro inflammatory cytokines. Histomorphological analysis of zebrafish testis showed decreased morphological alterations. With solid evidence of its anticancer effects through multiple biological mechanisms, including apoptosis induction, oxidative stress reduction, and oncogene suppression, these findings warrant further exploration of <em>N. sativa</em> as part of integrative cancer therapies to improve outcomes for patients with testicular cancer.</div></div>\",\"PeriodicalId\":10616,\"journal\":{\"name\":\"Computational Biology and Chemistry\",\"volume\":\"118 \",\"pages\":\"Article 108455\"},\"PeriodicalIF\":2.6000,\"publicationDate\":\"2025-04-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computational Biology and Chemistry\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S147692712500115X\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational Biology and Chemistry","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S147692712500115X","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOLOGY","Score":null,"Total":0}
Black seed (Nigella sativa) extract enhances early and late apoptosis through activation of caspase-3 mediated regulatory pathway in LC540 cells: A network pharmacological and molecular docking approach
Testicular cancer continues to rise in incidence globally, and conventional chemotherapy is often associated with severe side effects that significantly impact patient’s quality of life. Identifying safer alternative therapies is becoming crucial day by day which leads to focus on naturally available phytocompounds with high bioactivity. Over the period of time, Nigella sativa (N. sativa) has garnered attention due to the presence of its rich bioactive compounds with antioxidant and anticancer properties, providing potential therapeutic benefits with minimal side effects. Since we used a network pharmacological based in-silico approach combined with in-vitro and in-vivo efficacy testing of N. sativa against testicular cancer. Molecular docking studies showed significant interactions between N. sativa phytochemicals and critical proteins involved in testicular and other cancer related pathways. Biochemical assays revealed decreased ROS levels with enhanced antioxidant enzyme activities such as SOD, CAT, GSH and reduced LDH levels. AO/PI staining further corroborated the enhanced apoptosis and necrosis rates in treated cells. m-RNA analysis demonstrated notable expression of inflammatory and apoptotic genes such as casp-3 and key testicular markers such as oct4, sox2 and other pro inflammatory cytokines. Histomorphological analysis of zebrafish testis showed decreased morphological alterations. With solid evidence of its anticancer effects through multiple biological mechanisms, including apoptosis induction, oxidative stress reduction, and oncogene suppression, these findings warrant further exploration of N. sativa as part of integrative cancer therapies to improve outcomes for patients with testicular cancer.
期刊介绍:
Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered.
Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered.
Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.