{"title":"中性和阴离子分子簇Y6Sn0/−(n = 1-12)结构和性质的理论研究","authors":"Xinchun Wu, Jucai Yang, Yaqing Chen, Caixia Dong","doi":"10.1007/s00894-025-06362-3","DOIUrl":null,"url":null,"abstract":"<div><h3>Context</h3><p>Transition metal (TM) doped sulfur clusters, because of their novel physicochemical properties, have significant applications in fields such as new energy and nanomaterials, and have thus received widespread attention from scientists. Theoretical studies on the structures and properties of TM doped sulfur clusters are essential for designing novel nanomaterials. Therefore, we deeply studied the ground state structures, evolutionary patterns, electronic and optical properties of molecular clusters Y<sub>6</sub>S<sub><i>n</i></sub><sup>0/−</sup> (<i>n</i> = 1—12). The relative stability, HOMO–LUMO gaps, and thermodynamic stability of the ground state structure Y<sub>6</sub>S<sub><i>n</i></sub><sup>0/−</sup> (<i>n</i> = 1—12) indicate that the Y<sub>6</sub>S<sub>8</sub><sup>−</sup> cluster not only has thermodynamic stability, but also possesses relative stability. The aforementioned findings suggest that the Y<sub>6</sub>S<sub>8</sub><sup>−</sup> cluster are the most suitable building block for further development into a potential optoelectronic material.</p><h3>Methods</h3><p>The ground state structures were studied using global search Artificial Bee Colony (ABC) algorithm combined with density functional theory (DFT) and implemented in Gaussian 09 software package. The photoelectron spectra as well as Infrared and Raman spectra were simulated using Multiwfn and Gaussian View software, respectively. The adaptive natural density partitioning (AdNDP) analysis was performed on the most stable configuration Y<sub>6</sub>S<sub>8</sub><sup>−</sup> using visual molecular dynamics (VMD) software.</p></div>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"31 5","pages":""},"PeriodicalIF":2.1000,"publicationDate":"2025-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Theoretical study on the structures and properties of neutral and anionic molecular clusters Y6Sn0/− (n = 1—12)\",\"authors\":\"Xinchun Wu, Jucai Yang, Yaqing Chen, Caixia Dong\",\"doi\":\"10.1007/s00894-025-06362-3\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Context</h3><p>Transition metal (TM) doped sulfur clusters, because of their novel physicochemical properties, have significant applications in fields such as new energy and nanomaterials, and have thus received widespread attention from scientists. Theoretical studies on the structures and properties of TM doped sulfur clusters are essential for designing novel nanomaterials. Therefore, we deeply studied the ground state structures, evolutionary patterns, electronic and optical properties of molecular clusters Y<sub>6</sub>S<sub><i>n</i></sub><sup>0/−</sup> (<i>n</i> = 1—12). The relative stability, HOMO–LUMO gaps, and thermodynamic stability of the ground state structure Y<sub>6</sub>S<sub><i>n</i></sub><sup>0/−</sup> (<i>n</i> = 1—12) indicate that the Y<sub>6</sub>S<sub>8</sub><sup>−</sup> cluster not only has thermodynamic stability, but also possesses relative stability. The aforementioned findings suggest that the Y<sub>6</sub>S<sub>8</sub><sup>−</sup> cluster are the most suitable building block for further development into a potential optoelectronic material.</p><h3>Methods</h3><p>The ground state structures were studied using global search Artificial Bee Colony (ABC) algorithm combined with density functional theory (DFT) and implemented in Gaussian 09 software package. The photoelectron spectra as well as Infrared and Raman spectra were simulated using Multiwfn and Gaussian View software, respectively. The adaptive natural density partitioning (AdNDP) analysis was performed on the most stable configuration Y<sub>6</sub>S<sub>8</sub><sup>−</sup> using visual molecular dynamics (VMD) software.</p></div>\",\"PeriodicalId\":651,\"journal\":{\"name\":\"Journal of Molecular Modeling\",\"volume\":\"31 5\",\"pages\":\"\"},\"PeriodicalIF\":2.1000,\"publicationDate\":\"2025-04-07\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Molecular Modeling\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s00894-025-06362-3\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Modeling","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s00894-025-06362-3","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Theoretical study on the structures and properties of neutral and anionic molecular clusters Y6Sn0/− (n = 1—12)
Context
Transition metal (TM) doped sulfur clusters, because of their novel physicochemical properties, have significant applications in fields such as new energy and nanomaterials, and have thus received widespread attention from scientists. Theoretical studies on the structures and properties of TM doped sulfur clusters are essential for designing novel nanomaterials. Therefore, we deeply studied the ground state structures, evolutionary patterns, electronic and optical properties of molecular clusters Y6Sn0/− (n = 1—12). The relative stability, HOMO–LUMO gaps, and thermodynamic stability of the ground state structure Y6Sn0/− (n = 1—12) indicate that the Y6S8− cluster not only has thermodynamic stability, but also possesses relative stability. The aforementioned findings suggest that the Y6S8− cluster are the most suitable building block for further development into a potential optoelectronic material.
Methods
The ground state structures were studied using global search Artificial Bee Colony (ABC) algorithm combined with density functional theory (DFT) and implemented in Gaussian 09 software package. The photoelectron spectra as well as Infrared and Raman spectra were simulated using Multiwfn and Gaussian View software, respectively. The adaptive natural density partitioning (AdNDP) analysis was performed on the most stable configuration Y6S8− using visual molecular dynamics (VMD) software.
期刊介绍:
The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling.
Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry.
Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.