识别退伍军人健康管理脊医诊所病人报告的结果测量文件:自然语言处理分析。

IF 3.1 3区 医学 Q2 MEDICAL INFORMATICS
Brian C Coleman, Kelsey L Corcoran, Cynthia A Brandt, Joseph L Goulet, Stephen L Luther, Anthony J Lisi
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引用次数: 0

摘要

背景:使用患者报告的结果测量(PROMs)是高质量、基于测量的捏脊治疗的预期组成部分。提供综合脊椎指压治疗的最大的医疗保健系统是退伍军人健康管理局(VHA)。挑战限制了在VHA国家范围内监测PROM作为护理质量指标的使用。结构化数据是不可用的,prom通常作为非结构化数据嵌入在临床文本笔记中,需要花费大量时间,同行进行图表审查以进行评估。临床文本记录的自然语言处理是一种很有前途的从非结构化文本中提取医疗质量数据的方法。目的:本研究旨在测试NLP方法识别VHA脊医文本笔记中记录的prom。方法:从VHA肌肉骨骼诊断/补充和综合健康队列中获得2017年10月1日至2020年9月30日的VHA捏脊记录。利用medspaCy和spaCy构建了基于规则的NLP模型,并对文本匹配和注释分类任务进行了评估。SpaCy被用来构建词袋、卷积神经网络和音符分类的集成模型。每个模型和任务的性能指标包括精度、召回率和F-measure。交叉验证用于验证统计和机器学习模型的性能指标估计。结果:我们的样本包括来自56,628名患者的377,213份就诊记录。基于规则的模型在软边界文本匹配方面表现良好(准确率=81.1%,召回率=96.7%,F-measure=88.2%),在音符分类方面表现优异(准确率=90.3%,召回率=99.5%,F-measure=94.7%)。在笔记分类任务中,统计模型和机器学习模型的交叉验证性能总体上非常好,但低于基于规则的模型性能。PROM文件的总体患病率较低(17.0%)。结论:我们在一系列任务中评估了多种NLP方法,使用基于规则的方法获得了最佳性能。通过利用NLP方法,我们可以克服非结构化临床文本记录带来的挑战,以跟踪记录的PROM使用。总体记录显示,脊椎指压治疗笔记中prom的使用率较低,并强调了质量改进的潜力。这项工作代表了识别和监测记录使用prom的方法学进步,以确保退伍军人一致,高质量的脊椎指压治疗。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Identifying Patient-Reported Outcome Measure Documentation in Veterans Health Administration Chiropractic Clinic Notes: Natural Language Processing Analysis.

Background: The use of patient-reported outcome measures (PROMs) is an expected component of high-quality, measurement-based chiropractic care. The largest health care system offering integrated chiropractic care is the Veterans Health Administration (VHA). Challenges limit monitoring PROM use as a care quality metric at a national scale in the VHA. Structured data are unavailable, with PROMs often embedded within clinic text notes as unstructured data requiring time-intensive, peer-conducted chart review for evaluation. Natural language processing (NLP) of clinic text notes is one promising solution to extracting care quality data from unstructured text.

Objective: This study aims to test NLP approaches to identify PROMs documented in VHA chiropractic text notes.

Methods: VHA chiropractic notes from October 1, 2017, to September 30, 2020, were obtained from the VHA Musculoskeletal Diagnosis/Complementary and Integrative Health Cohort. A rule-based NLP model built using medspaCy and spaCy was evaluated on text matching and note categorization tasks. SpaCy was used to build bag-of-words, convoluted neural networks, and ensemble models for note categorization. Performance metrics for each model and task included precision, recall, and F-measure. Cross-validation was used to validate performance metric estimates for the statistical and machine-learning models.

Results: Our sample included 377,213 visit notes from 56,628 patients. The rule-based model performance was good for soft-boundary text-matching (precision=81.1%, recall=96.7%, and F-measure=88.2%) and excellent for note categorization (precision=90.3%, recall=99.5%, and F-measure=94.7%). Cross-validation performance of the statistical and machine learning models for the note categorization task was very good overall, but lower than rule-based model performance. The overall prevalence of PROM documentation was low (17.0%).

Conclusions: We evaluated multiple NLP methods across a series of tasks, with optimal performance achieved using a rule-based method. By leveraging NLP approaches, we can overcome the challenges posed by unstructured clinical text notes to track documented PROM use. Overall documented use of PROMs in chiropractic notes was low and highlights a potential for quality improvement. This work represents a methodological advancement in the identification and monitoring of documented use of PROMs to ensure consistent, high-quality chiropractic care for veterans.

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来源期刊
JMIR Medical Informatics
JMIR Medical Informatics Medicine-Health Informatics
CiteScore
7.90
自引率
3.10%
发文量
173
审稿时长
12 weeks
期刊介绍: JMIR Medical Informatics (JMI, ISSN 2291-9694) is a top-rated, tier A journal which focuses on clinical informatics, big data in health and health care, decision support for health professionals, electronic health records, ehealth infrastructures and implementation. It has a focus on applied, translational research, with a broad readership including clinicians, CIOs, engineers, industry and health informatics professionals. Published by JMIR Publications, publisher of the Journal of Medical Internet Research (JMIR), the leading eHealth/mHealth journal (Impact Factor 2016: 5.175), JMIR Med Inform has a slightly different scope (emphasizing more on applications for clinicians and health professionals rather than consumers/citizens, which is the focus of JMIR), publishes even faster, and also allows papers which are more technical or more formative than what would be published in the Journal of Medical Internet Research.
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