局部附近分岔导致临界减速的协同效应:蘑菇分岔的情况。

IF 2.2 3区 物理与天体物理 Q2 PHYSICS, FLUIDS & PLASMAS
Mariona Fucho-Rius, Smitha Maretvadakethope, Àlex Haro, Tomás Alarcón, Josep Sardanyés, Rubén Pérez-Carrasco
{"title":"局部附近分岔导致临界减速的协同效应:蘑菇分岔的情况。","authors":"Mariona Fucho-Rius, Smitha Maretvadakethope, Àlex Haro, Tomás Alarcón, Josep Sardanyés, Rubén Pérez-Carrasco","doi":"10.1103/PhysRevE.111.024213","DOIUrl":null,"url":null,"abstract":"<p><p>The behavior of nonlinear systems near critical transitions has significant implications for stability, transients, and resilience in complex systems. Transient times, τ, become extremely long near phase transitions (or bifurcations) in a phenomenon known as critical slowing down, and are observed in electronic circuits, circuit quantum electrodynamics, ecosystems, and gene regulatory networks. Critical slowing down typically follows universal laws of the form τ∼|μ-μ_{c}|^{β}, with μ being the control parameter and μ_{c} its critical value. For instance, β=-1/2 close to saddle-node bifurcations. Despite intensive research on slowing down phenomena for single bifurcations, both local and global, the behavior of transients when several bifurcations are close to each other remains unknown. Here, we investigate transients near two saddle-node bifurcations merging into a transcritical one. Using a nonlinear gene-regulatory model and a normal form exhibiting a mushroom bifurcation diagram we show, both analytically and numerically, a synergistic, i.e., nonadditive, lengthening of transients due to coupled ghost effects and transcritical slowing down. We also show that intrinsic and extrinsic noise play opposite roles in the slowing down of the transition, allowing us to control the timing of the transition without compromising the precision of timing. This establishes molecular strategies to generate genetic timers with transients much larger than the typical timescales of the reactions involved.</p>","PeriodicalId":48698,"journal":{"name":"Physical Review E","volume":"111 2-1","pages":"024213"},"PeriodicalIF":2.2000,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Local nearby bifurcations lead to synergies in critical slowing down: The case of mushroom bifurcations.\",\"authors\":\"Mariona Fucho-Rius, Smitha Maretvadakethope, Àlex Haro, Tomás Alarcón, Josep Sardanyés, Rubén Pérez-Carrasco\",\"doi\":\"10.1103/PhysRevE.111.024213\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The behavior of nonlinear systems near critical transitions has significant implications for stability, transients, and resilience in complex systems. Transient times, τ, become extremely long near phase transitions (or bifurcations) in a phenomenon known as critical slowing down, and are observed in electronic circuits, circuit quantum electrodynamics, ecosystems, and gene regulatory networks. Critical slowing down typically follows universal laws of the form τ∼|μ-μ_{c}|^{β}, with μ being the control parameter and μ_{c} its critical value. For instance, β=-1/2 close to saddle-node bifurcations. Despite intensive research on slowing down phenomena for single bifurcations, both local and global, the behavior of transients when several bifurcations are close to each other remains unknown. Here, we investigate transients near two saddle-node bifurcations merging into a transcritical one. Using a nonlinear gene-regulatory model and a normal form exhibiting a mushroom bifurcation diagram we show, both analytically and numerically, a synergistic, i.e., nonadditive, lengthening of transients due to coupled ghost effects and transcritical slowing down. We also show that intrinsic and extrinsic noise play opposite roles in the slowing down of the transition, allowing us to control the timing of the transition without compromising the precision of timing. This establishes molecular strategies to generate genetic timers with transients much larger than the typical timescales of the reactions involved.</p>\",\"PeriodicalId\":48698,\"journal\":{\"name\":\"Physical Review E\",\"volume\":\"111 2-1\",\"pages\":\"024213\"},\"PeriodicalIF\":2.2000,\"publicationDate\":\"2025-02-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Physical Review E\",\"FirstCategoryId\":\"101\",\"ListUrlMain\":\"https://doi.org/10.1103/PhysRevE.111.024213\",\"RegionNum\":3,\"RegionCategory\":\"物理与天体物理\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"PHYSICS, FLUIDS & PLASMAS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Physical Review E","FirstCategoryId":"101","ListUrlMain":"https://doi.org/10.1103/PhysRevE.111.024213","RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"PHYSICS, FLUIDS & PLASMAS","Score":null,"Total":0}
引用次数: 0

摘要

非线性系统在临界过渡附近的行为对复杂系统的稳定性、瞬态和弹性具有重要意义。在称为临界减速的现象中,瞬态时间τ在相变(或分岔)附近变得非常长,并且在电子电路,电路量子电动力学,生态系统和基因调控网络中都可以观察到。临界慢化通常遵循形式为τ ~ |μ-μ_{c}|^{β}的普遍规律,其中μ为控制参数,μ_{c}为临界值。例如,β=-1/2接近鞍节点分岔。尽管对局部和全局单分岔的减速现象进行了深入的研究,但当多个分岔彼此接近时,暂态的行为仍然未知。在这里,我们研究了两个鞍节点分支合并成一个跨临界分支附近的瞬态。利用非线性基因调控模型和表现出蘑菇分岔图的范式,我们在分析和数值上都表明,由于耦合鬼效应和跨临界减速,瞬态延长具有协同性,即非加性。我们还表明,内在和外在噪声在减缓过渡中发挥相反的作用,使我们能够在不影响定时精度的情况下控制过渡的定时。这建立了分子策略,以产生瞬时比所涉及反应的典型时间尺度大得多的遗传计时器。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Local nearby bifurcations lead to synergies in critical slowing down: The case of mushroom bifurcations.

The behavior of nonlinear systems near critical transitions has significant implications for stability, transients, and resilience in complex systems. Transient times, τ, become extremely long near phase transitions (or bifurcations) in a phenomenon known as critical slowing down, and are observed in electronic circuits, circuit quantum electrodynamics, ecosystems, and gene regulatory networks. Critical slowing down typically follows universal laws of the form τ∼|μ-μ_{c}|^{β}, with μ being the control parameter and μ_{c} its critical value. For instance, β=-1/2 close to saddle-node bifurcations. Despite intensive research on slowing down phenomena for single bifurcations, both local and global, the behavior of transients when several bifurcations are close to each other remains unknown. Here, we investigate transients near two saddle-node bifurcations merging into a transcritical one. Using a nonlinear gene-regulatory model and a normal form exhibiting a mushroom bifurcation diagram we show, both analytically and numerically, a synergistic, i.e., nonadditive, lengthening of transients due to coupled ghost effects and transcritical slowing down. We also show that intrinsic and extrinsic noise play opposite roles in the slowing down of the transition, allowing us to control the timing of the transition without compromising the precision of timing. This establishes molecular strategies to generate genetic timers with transients much larger than the typical timescales of the reactions involved.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Physical Review E
Physical Review E PHYSICS, FLUIDS & PLASMASPHYSICS, MATHEMAT-PHYSICS, MATHEMATICAL
CiteScore
4.50
自引率
16.70%
发文量
2110
期刊介绍: Physical Review E (PRE), broad and interdisciplinary in scope, focuses on collective phenomena of many-body systems, with statistical physics and nonlinear dynamics as the central themes of the journal. Physical Review E publishes recent developments in biological and soft matter physics including granular materials, colloids, complex fluids, liquid crystals, and polymers. The journal covers fluid dynamics and plasma physics and includes sections on computational and interdisciplinary physics, for example, complex networks.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信