原发性开角型青光眼的染色质调节因子特征和潜在候选药物的鉴定。

IF 3 4区 医学 Q2 GENETICS & HEREDITY
Epigenomics Pub Date : 2025-04-01 Epub Date: 2025-03-17 DOI:10.1080/17501911.2025.2479420
Xinyue Zhang, Lulu Xiao, Xiaoyu Zhou, Jiahao Xu, Li Liao, Ping Wu, Zhimin Liao, Xuanchu Duan
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引用次数: 0

摘要

目的:本研究旨在建立染色质调控因子(CR)特征,为原发性开角型青光眼(POAG)的发病机制提供新的表观遗传学见解。材料与方法:采用生物信息学方法分析CRs在小梁网(TM)组织中的表达谱;通过细胞实验进一步验证所选择的hub cr。结果:我们发现POAG患者的颞叶免疫微环境发生了变化,并鉴定出3种与免疫相关的差异表达的CRs。然后,我们成功构建并证明了基于这3个cr的预测签名,可以有效地预测POAG的风险。鉴定出与这3种CRs和mirna共表达的基因,并成功构建miRNA-hub CR网络。基因集富集分析结果表明,这3种hub cr均与神经退行性疾病相关。构建人小梁网状细胞(HTMC)氧化应激模型,发现KDM5B在该细胞模型中显著下调。最后,我们发现了10种可能对POAG患者有帮助的药物。结论:TM组织中CR表达异常可能通过多种机制参与POAG的发生和发展。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Identification of a chromatin regulator signature and potential candidate drugs for primary open-angle glaucoma.

Aims: This research aims to establish a chromatin regulator (CR) signature to provide new epigenetic insights into the pathogenesis of primary open-angle glaucoma (POAG).

Materials & methods: The expression profile of CRs in trabecular meshwork (TM) tissues was analyzed by bioinformatics analysis; The selected hub CRs were further verified by cell experiments.

Results: We found the immune microenvironment of the TMwas changed in POAG patients and identified 3 differentially expressed CRs that were relevant to immunity. Then, we successfully constructed and proved a predicted signature based on these 3 CRs, which could effectively predict the risk of POAG. The genes co-expressed with these 3 CRs and miRNAs with are gulatory relationship were identified, and a miRNA-hub CR network was successfully constructed. The results of the Gene Set Enrichment analysis indicated that these 3 hub CRs were all associated with neurodegenerative diseases. Moreover, the human trabecular meshwork cell (HTMC) oxidative stress model was constructed, and KDM5B was significantly down-regulated in this cell model. Finally, we found 10 agents that might be helpful for patients with POAG.

Conclusions: Dysregulation of CR expression in TM tissues may be involved in the occurrence and progression of POAG through multiple mechanisms.

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来源期刊
Epigenomics
Epigenomics GENETICS & HEREDITY-
CiteScore
5.80
自引率
2.60%
发文量
95
审稿时长
>12 weeks
期刊介绍: Epigenomics provides the forum to address the rapidly progressing research developments in this ever-expanding field; to report on the major challenges ahead and critical advances that are propelling the science forward. The journal delivers this information in concise, at-a-glance article formats – invaluable to a time constrained community. Substantial developments in our current knowledge and understanding of genomics and epigenetics are constantly being made, yet this field is still in its infancy. Epigenomics provides a critical overview of the latest and most significant advances as they unfold and explores their potential application in the clinical setting.
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