Sarah M Burbach, Bryan Briney
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引用次数: 0

摘要

越来越多的人开始关注用非配对序列和原生配对序列混合预训练抗体语言模型(ABLMs),试图将用原生配对序列训练的公认优势与大规模非配对抗体序列数据集结合起来。然而,鉴于这一策略的新颖性,该领域缺乏对数据处理方法和训练策略的系统评估,而这些方法和策略既能最大限度地发挥混合训练数据的优势,又能适应现有配对和非配对数据集规模严重失衡的情况。在这里,我们介绍了一种针对 AbLMs 的课程学习方法,它有助于在训练过程中从非配对序列逐步过渡到配对序列。我们对这种方法进行了优化,结果表明,在下游分类任务中,6.5 亿参数的课程模型 CurrAb 优于现有的混合 AbLM。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A curriculum learning approach to training antibody language models.

There is growing interest in pre-training antibody language models (AbLMs) with a mixture of unpaired and natively paired sequences, seeking to combine the proven benefits of training with natively paired sequences with the massive scale of unpaired antibody sequence datasets. However, given the novelty of this strategy, the field lacks a systematic evaluation of data processing methods and training strategies that maximize the benefits of mixed training data while accommodating the significant imbalance in the size of existing paired and unpaired datasets. Here we introduce a method of curriculum learning for AbLMs, which facilitates a gradual transition from unpaired to paired sequences during training. We optimize this method and show that a 650M-parameter curriculum model, CurrAb, outperforms existing mixed AbLMs in downstream classification tasks.

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