{"title":"细胞生长的几何平衡模型。","authors":"Alexei Vazquez , Tomáš Gedeon","doi":"10.1016/j.jtbi.2025.112085","DOIUrl":null,"url":null,"abstract":"<div><div>The proteome balance constraint in metabolic flux balance analysis asserts that the proteome is constructed by ribosomes, which themselves contain many proteins. This leads to a fundamental question of optimal allocation of limited proteome among different pools of enzymes, which include ribosomes themselves. However, recent work points to additional constraints imposed by the cell geometry. In this paper we deduce the <em>proteogeometric constraint</em><span><math><mrow><msub><mover><mi>π</mi><mo>¯</mo></mover><mi>A</mi></msub><mo>=</mo><msub><mi>π</mi><mi>A</mi></msub><mo>+</mo><mi>θ</mi><msub><mi>π</mi><mi>L</mi></msub><mo>/</mo><msub><mi>π</mi><mi>P</mi></msub></mrow></math></span>, where <span><math><msub><mi>π</mi><mi>A</mi></msub></math></span>, <span><math><msub><mi>π</mi><mi>P</mi></msub></math></span> and <span><math><msub><mi>π</mi><mi>L</mi></msub></math></span> are the proteomic fractions allocated to the cell surface area, protein synthesis and cell membrane phospholipids synthesis and <span><math><msub><mover><mi>π</mi><mo>¯</mo></mover><mi>A</mi></msub></math></span> and <span><math><mi>θ</mi></math></span> are constants imposed by geometry of the cell. We illustrate the relevance of this constraint using a reduced model of cell metabolism, illuminating the interplay between cell metabolism and cell geometry.</div></div>","PeriodicalId":54763,"journal":{"name":"Journal of Theoretical Biology","volume":"604 ","pages":"Article 112085"},"PeriodicalIF":1.9000,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Geometrically balanced model of cell growth\",\"authors\":\"Alexei Vazquez , Tomáš Gedeon\",\"doi\":\"10.1016/j.jtbi.2025.112085\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>The proteome balance constraint in metabolic flux balance analysis asserts that the proteome is constructed by ribosomes, which themselves contain many proteins. This leads to a fundamental question of optimal allocation of limited proteome among different pools of enzymes, which include ribosomes themselves. However, recent work points to additional constraints imposed by the cell geometry. In this paper we deduce the <em>proteogeometric constraint</em><span><math><mrow><msub><mover><mi>π</mi><mo>¯</mo></mover><mi>A</mi></msub><mo>=</mo><msub><mi>π</mi><mi>A</mi></msub><mo>+</mo><mi>θ</mi><msub><mi>π</mi><mi>L</mi></msub><mo>/</mo><msub><mi>π</mi><mi>P</mi></msub></mrow></math></span>, where <span><math><msub><mi>π</mi><mi>A</mi></msub></math></span>, <span><math><msub><mi>π</mi><mi>P</mi></msub></math></span> and <span><math><msub><mi>π</mi><mi>L</mi></msub></math></span> are the proteomic fractions allocated to the cell surface area, protein synthesis and cell membrane phospholipids synthesis and <span><math><msub><mover><mi>π</mi><mo>¯</mo></mover><mi>A</mi></msub></math></span> and <span><math><mi>θ</mi></math></span> are constants imposed by geometry of the cell. We illustrate the relevance of this constraint using a reduced model of cell metabolism, illuminating the interplay between cell metabolism and cell geometry.</div></div>\",\"PeriodicalId\":54763,\"journal\":{\"name\":\"Journal of Theoretical Biology\",\"volume\":\"604 \",\"pages\":\"Article 112085\"},\"PeriodicalIF\":1.9000,\"publicationDate\":\"2025-03-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Theoretical Biology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0022519325000517\",\"RegionNum\":4,\"RegionCategory\":\"数学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Theoretical Biology","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0022519325000517","RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOLOGY","Score":null,"Total":0}
引用次数: 0
摘要
代谢通量平衡分析中的蛋白质组平衡约束认为蛋白质组是由核糖体构成的,核糖体本身含有许多蛋白质。这导致了一个基本的问题,即在不同的酶池(包括核糖体本身)中,有限的蛋白质组的最佳分配。然而,最近的工作指出了细胞几何形状施加的额外约束。本文推导出蛋白质几何约束π¯A=πA+θπ l /π p,其中πA、π p和π l是分配给细胞表面积、蛋白质合成和细胞膜磷脂合成的蛋白质组学分数,π¯A和θ是细胞几何所施加的常数。我们使用细胞代谢的简化模型说明了这种约束的相关性,阐明了细胞代谢和细胞几何之间的相互作用。
The proteome balance constraint in metabolic flux balance analysis asserts that the proteome is constructed by ribosomes, which themselves contain many proteins. This leads to a fundamental question of optimal allocation of limited proteome among different pools of enzymes, which include ribosomes themselves. However, recent work points to additional constraints imposed by the cell geometry. In this paper we deduce the proteogeometric constraint, where , and are the proteomic fractions allocated to the cell surface area, protein synthesis and cell membrane phospholipids synthesis and and are constants imposed by geometry of the cell. We illustrate the relevance of this constraint using a reduced model of cell metabolism, illuminating the interplay between cell metabolism and cell geometry.
期刊介绍:
The Journal of Theoretical Biology is the leading forum for theoretical perspectives that give insight into biological processes. It covers a very wide range of topics and is of interest to biologists in many areas of research, including:
• Brain and Neuroscience
• Cancer Growth and Treatment
• Cell Biology
• Developmental Biology
• Ecology
• Evolution
• Immunology,
• Infectious and non-infectious Diseases,
• Mathematical, Computational, Biophysical and Statistical Modeling
• Microbiology, Molecular Biology, and Biochemistry
• Networks and Complex Systems
• Physiology
• Pharmacodynamics
• Animal Behavior and Game Theory
Acceptable papers are those that bear significant importance on the biology per se being presented, and not on the mathematical analysis. Papers that include some data or experimental material bearing on theory will be considered, including those that contain comparative study, statistical data analysis, mathematical proof, computer simulations, experiments, field observations, or even philosophical arguments, which are all methods to support or reject theoretical ideas. However, there should be a concerted effort to make papers intelligible to biologists in the chosen field.