{"title":"埃姆舍集水区(德国)Sialislutaria(昆虫纲,巨翅目)的种群遗传数据(COI、ddRAD)。","authors":"Martina Weiss, Florian Leese","doi":"10.3897/BDJ.13.e141997","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>In urban river systems, fragmentation of habitats and in-stream dispersal barriers play a major role in shaping the population genetic structure of freshwater macroinvertebrate species. In small, fragmented populations, effects of genetic drift and inbreeding are enhanced, which can lead to increased population differentiation and genetic diversity loss. One formerly strongly degraded and fragmented stream system in a highly urbanised area is the Emscher catchment in North Rhine-Westphalia, Germany. Major restoration efforts have led to an improvement of water and habitat quality over the past 20 years also in the formerly polluted tributaries, for example, the Boye catchment. However, the analysis of the population structure of two different amphipod and isopod species has revealed that some populations are still strongly isolated, indicating persisting gene flow barriers. In contrast, the effects are expected to be less pronounced in merolimnic species, which have an adult winged life stage, such as the alderfly <i>Sialislutaria</i> (Linnaeus, 1758) . However, this species was much less abundant in the Boye catchment and not found in adjacent catchments (only 9 of 41 sampling sites), reducing the power of possible analyses.</p><p><strong>New information: </strong>As no population genetic studies of <i>S.lutaria</i> have to our knowledge been published so far and genetic resources are generally scarce for this species, we generated and present here population genetic data for 70 <i>S.lutaria</i> specimens for the mitochondrial cytochrome c oxidase I (COI) gene and, more importantly, high resolution genomic single nucleotide polymorphism (SNP) data for 71 specimens, generated with double-digest restriction site-associated sequencing (ddRAD-seq). These data can be valuable for further studies, analysing the population genetic structure, dispersal pathways and potential gene flow barriers for <i>S.lutaria</i> on a larger geographic scale. Additional to presenting the data, we also give first insights in the population structure on a small geographic scale (area of approx. 15 km<sup>2</sup>). While the population differentiation was generally low, as expected on this small scale, we still found that gene flow was not equally strong between all populations, but that one population played a central role as a source and sink population, which cannot only be explained by the distance between populations.</p>","PeriodicalId":55994,"journal":{"name":"Biodiversity Data Journal","volume":"13 ","pages":"e141997"},"PeriodicalIF":1.0000,"publicationDate":"2025-02-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11871517/pdf/","citationCount":"0","resultStr":"{\"title\":\"Population genetic data (COI, ddRAD) of <i>Sialislutaria</i> (Insecta, Megaloptera) from the Emscher catchment (Germany).\",\"authors\":\"Martina Weiss, Florian Leese\",\"doi\":\"10.3897/BDJ.13.e141997\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>In urban river systems, fragmentation of habitats and in-stream dispersal barriers play a major role in shaping the population genetic structure of freshwater macroinvertebrate species. In small, fragmented populations, effects of genetic drift and inbreeding are enhanced, which can lead to increased population differentiation and genetic diversity loss. One formerly strongly degraded and fragmented stream system in a highly urbanised area is the Emscher catchment in North Rhine-Westphalia, Germany. Major restoration efforts have led to an improvement of water and habitat quality over the past 20 years also in the formerly polluted tributaries, for example, the Boye catchment. However, the analysis of the population structure of two different amphipod and isopod species has revealed that some populations are still strongly isolated, indicating persisting gene flow barriers. In contrast, the effects are expected to be less pronounced in merolimnic species, which have an adult winged life stage, such as the alderfly <i>Sialislutaria</i> (Linnaeus, 1758) . However, this species was much less abundant in the Boye catchment and not found in adjacent catchments (only 9 of 41 sampling sites), reducing the power of possible analyses.</p><p><strong>New information: </strong>As no population genetic studies of <i>S.lutaria</i> have to our knowledge been published so far and genetic resources are generally scarce for this species, we generated and present here population genetic data for 70 <i>S.lutaria</i> specimens for the mitochondrial cytochrome c oxidase I (COI) gene and, more importantly, high resolution genomic single nucleotide polymorphism (SNP) data for 71 specimens, generated with double-digest restriction site-associated sequencing (ddRAD-seq). These data can be valuable for further studies, analysing the population genetic structure, dispersal pathways and potential gene flow barriers for <i>S.lutaria</i> on a larger geographic scale. Additional to presenting the data, we also give first insights in the population structure on a small geographic scale (area of approx. 15 km<sup>2</sup>). While the population differentiation was generally low, as expected on this small scale, we still found that gene flow was not equally strong between all populations, but that one population played a central role as a source and sink population, which cannot only be explained by the distance between populations.</p>\",\"PeriodicalId\":55994,\"journal\":{\"name\":\"Biodiversity Data Journal\",\"volume\":\"13 \",\"pages\":\"e141997\"},\"PeriodicalIF\":1.0000,\"publicationDate\":\"2025-02-21\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11871517/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Biodiversity Data Journal\",\"FirstCategoryId\":\"93\",\"ListUrlMain\":\"https://doi.org/10.3897/BDJ.13.e141997\",\"RegionNum\":4,\"RegionCategory\":\"环境科学与生态学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q3\",\"JCRName\":\"BIODIVERSITY CONSERVATION\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biodiversity Data Journal","FirstCategoryId":"93","ListUrlMain":"https://doi.org/10.3897/BDJ.13.e141997","RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q3","JCRName":"BIODIVERSITY CONSERVATION","Score":null,"Total":0}
Population genetic data (COI, ddRAD) of Sialislutaria (Insecta, Megaloptera) from the Emscher catchment (Germany).
Background: In urban river systems, fragmentation of habitats and in-stream dispersal barriers play a major role in shaping the population genetic structure of freshwater macroinvertebrate species. In small, fragmented populations, effects of genetic drift and inbreeding are enhanced, which can lead to increased population differentiation and genetic diversity loss. One formerly strongly degraded and fragmented stream system in a highly urbanised area is the Emscher catchment in North Rhine-Westphalia, Germany. Major restoration efforts have led to an improvement of water and habitat quality over the past 20 years also in the formerly polluted tributaries, for example, the Boye catchment. However, the analysis of the population structure of two different amphipod and isopod species has revealed that some populations are still strongly isolated, indicating persisting gene flow barriers. In contrast, the effects are expected to be less pronounced in merolimnic species, which have an adult winged life stage, such as the alderfly Sialislutaria (Linnaeus, 1758) . However, this species was much less abundant in the Boye catchment and not found in adjacent catchments (only 9 of 41 sampling sites), reducing the power of possible analyses.
New information: As no population genetic studies of S.lutaria have to our knowledge been published so far and genetic resources are generally scarce for this species, we generated and present here population genetic data for 70 S.lutaria specimens for the mitochondrial cytochrome c oxidase I (COI) gene and, more importantly, high resolution genomic single nucleotide polymorphism (SNP) data for 71 specimens, generated with double-digest restriction site-associated sequencing (ddRAD-seq). These data can be valuable for further studies, analysing the population genetic structure, dispersal pathways and potential gene flow barriers for S.lutaria on a larger geographic scale. Additional to presenting the data, we also give first insights in the population structure on a small geographic scale (area of approx. 15 km2). While the population differentiation was generally low, as expected on this small scale, we still found that gene flow was not equally strong between all populations, but that one population played a central role as a source and sink population, which cannot only be explained by the distance between populations.
Biodiversity Data JournalAgricultural and Biological Sciences-Ecology, Evolution, Behavior and Systematics
CiteScore
2.20
自引率
7.70%
发文量
283
审稿时长
6 weeks
期刊介绍:
Biodiversity Data Journal (BDJ) is a community peer-reviewed, open-access, comprehensive online platform, designed to accelerate publishing, dissemination and sharing of biodiversity-related data of any kind. All structural elements of the articles – text, morphological descriptions, occurrences, data tables, etc. – will be treated and stored as DATA, in accordance with the Data Publishing Policies and Guidelines of Pensoft Publishers.
The journal will publish papers in biodiversity science containing taxonomic, floristic/faunistic, morphological, genomic, phylogenetic, ecological or environmental data on any taxon of any geological age from any part of the world with no lower or upper limit to manuscript size.