计算筛选错误确定的共晶结构。

IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY
Simona Chalupná, Michal Hušák, Jan Čejka, František Fňukal, Jiří Klimeš
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引用次数: 0

摘要

药物固体形式,如盐和共晶,在药物配方中起着至关重要的作用。尽管主要是由于单个氢原子的不同,美国食品和药物管理局对这些形式的监管要求差别很大。我们之前开发了一种基于dft的计算方法来区分盐和共晶。该方法对95个结构进行了验证,对氢键长度大于2.613 (16)Å的体系表现良好。本文将讨论rSCAN函数相对于PBE函数的优点。我们将数据集扩展到404个共晶模型。分析证实其中301种确实是共晶。此外,鉴定了87种盐-共晶连续形态,并将16种共晶归类为可能的盐。对这16个问题结构进行了进一步的研究,其中7个结构长成了单晶,并用单晶x射线衍射确定了它们的结构。在表现出盐样行为的相中,有五种被确定为盐。在某些情况下,rSCAN单独给出的强氢键结果不可靠,但这些差异通常使用更好的重整化或混合泛函(即r2SCAN, PBE0和PBE50)来纠正。对于未来的计算,我们建议使用r2SCAN函数进行盐-共晶分化,因为它提供了可靠的结果O-H…N键长度大于2.554 (5)Å。r2SCAN函数在精度和计算效率之间提供了很好的平衡,适用于具有较长O-H…N债券。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Computation screening for incorrectly determined cocrystal structures.

Pharmaceutical solid forms, like salts and cocrystals, play a crucial role in drug formulation. Despite differing mainly by a single hydrogen atom, the regulatory requirements set by the US Food and Drug Administration for these forms vary significantly. We previously developed a DFT-based computational method to distinguish salts from cocrystals. This method, validated on 95 structures, performed well for systems where hydrogen bonds were longer than 2.613 (16) Å. Here, benefits of the rSCAN functional over the PBE functional are discussed. We expand the dataset to 404 cocrystal models. Analysis confirms that 301 of these forms are indeed cocrystals. Additionally, 87 salt-cocrystal continuum forms are identified and 16 cocrystals are classified as possible salts. These 16 problematic structures are further investigated and for seven of them, single crystals were grown and their structure determined using single-crystal X-ray diffraction. Among the phases exhibiting salt-like behaviour, five of them are identified as salts. In some cases, rSCAN alone gives unreliable results for strong hydrogen bonds, but these discrepancies are often corrected using better-renormalized or hybrid functionals (i.e. r2SCAN, PBE0 and PBE50). For future calculations, we recommend using the r2SCAN functional for salt-cocrystal differentiation, as it provides reliable results for O-H...N bonds longer than 2.554 (5) Å. The r2SCAN functional offers a good balance between accuracy and computational efficiency for systems with longer O-H...N bonds.

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来源期刊
Acta crystallographica Section B, Structural science, crystal engineering and materials
Acta crystallographica Section B, Structural science, crystal engineering and materials CHEMISTRY, MULTIDISCIPLINARYCRYSTALLOGRAPH-CRYSTALLOGRAPHY
CiteScore
3.60
自引率
5.30%
发文量
0
期刊介绍: Acta Crystallographica Section B: Structural Science, Crystal Engineering and Materials publishes scientific articles related to the structural science of compounds and materials in the widest sense. Knowledge of the arrangements of atoms, including their temporal variations and dependencies on temperature and pressure, is often the key to understanding physical and chemical phenomena and is crucial for the design of new materials and supramolecular devices. Acta Crystallographica B is the forum for the publication of such contributions. Scientific developments based on experimental studies as well as those based on theoretical approaches, including crystal-structure prediction, structure-property relations and the use of databases of crystal structures, are published.
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