Zhaohui Liao Arter, Kevin Shieh, Misako Nagasaka, Sai-Hong Ignatius Ou
{"title":"BRAF突变(BRAF+)三大类(I、II、III)非小细胞肺癌AACR GENIE数据库肿瘤突变负荷(TMB)的综合调查","authors":"Zhaohui Liao Arter, Kevin Shieh, Misako Nagasaka, Sai-Hong Ignatius Ou","doi":"10.2147/LCTT.S493835","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong><i>BRAF</i> mutations are generally divided into three classes based on the different altered mechanism of activation.</p><p><strong>Methods: </strong>We queried the public AACR GENIE database (version 13.1), which includes tumor mutation burden (TMB) data, to explore potential molecular differences among the three classes of non-small cell lung cancer (NSCLC).</p><p><strong>Results: </strong>Out of 20,713 unique NSCLC patients, 324 (1.6%) were <i>BRAF</i> mutations positive <i>(BRAF</i>+) class I, 260 (1.3%) class II, and 236 (1.1%) class III. The distribution of patient characteristics, including sex, age, and race, remains uniform across the three classes. The median TMB (mt/MB) was 6.5, 9.5, and 10.3 for class I, II, and III, respectively. The mean TMB was 61.5 ± 366.1 for class I, 40.5 ± 156.2 for class II, and 129.4 ± 914.8 for class III. About 30.5% of <i>BRAF</i> V600E+ patients had TMB ≥ 10; 47.7% of class II had TMB ≥ 10; and 52.5% of class III had TMB ≥ 10. For those patients with TMB ≥ 10, the median TMB was 45, 28.9, 18.4 for class I, II, and III, respectively. For TMB ≥ 10 patients, <i>TP53</i> mutation was the most common co-alterations across all 3 classes.</p><p><strong>Conclusion: </strong>A substantial proportion of <i>BRAF</i>+ NSCLC patients exhibited a TMB ≥ 10, among all three classes of <i>BRAF</i> mutation classification, including <i>BRAF</i> V600E+ NSCLC. Class III mutations appeared to have the highest median TMB, followed by class II, and then class I.</p>","PeriodicalId":18066,"journal":{"name":"Lung Cancer: Targets and Therapy","volume":"16 ","pages":"1-9"},"PeriodicalIF":5.1000,"publicationDate":"2025-02-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11847431/pdf/","citationCount":"0","resultStr":"{\"title\":\"Comprehensive Survey of AACR GENIE Database of Tumor Mutation Burden (TMB) Among All Three Classes (I, II, III) of <i>BRAF</i> Mutated (<i>BRAF+</i>) NSCLC.\",\"authors\":\"Zhaohui Liao Arter, Kevin Shieh, Misako Nagasaka, Sai-Hong Ignatius Ou\",\"doi\":\"10.2147/LCTT.S493835\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong><i>BRAF</i> mutations are generally divided into three classes based on the different altered mechanism of activation.</p><p><strong>Methods: </strong>We queried the public AACR GENIE database (version 13.1), which includes tumor mutation burden (TMB) data, to explore potential molecular differences among the three classes of non-small cell lung cancer (NSCLC).</p><p><strong>Results: </strong>Out of 20,713 unique NSCLC patients, 324 (1.6%) were <i>BRAF</i> mutations positive <i>(BRAF</i>+) class I, 260 (1.3%) class II, and 236 (1.1%) class III. The distribution of patient characteristics, including sex, age, and race, remains uniform across the three classes. The median TMB (mt/MB) was 6.5, 9.5, and 10.3 for class I, II, and III, respectively. The mean TMB was 61.5 ± 366.1 for class I, 40.5 ± 156.2 for class II, and 129.4 ± 914.8 for class III. About 30.5% of <i>BRAF</i> V600E+ patients had TMB ≥ 10; 47.7% of class II had TMB ≥ 10; and 52.5% of class III had TMB ≥ 10. For those patients with TMB ≥ 10, the median TMB was 45, 28.9, 18.4 for class I, II, and III, respectively. For TMB ≥ 10 patients, <i>TP53</i> mutation was the most common co-alterations across all 3 classes.</p><p><strong>Conclusion: </strong>A substantial proportion of <i>BRAF</i>+ NSCLC patients exhibited a TMB ≥ 10, among all three classes of <i>BRAF</i> mutation classification, including <i>BRAF</i> V600E+ NSCLC. Class III mutations appeared to have the highest median TMB, followed by class II, and then class I.</p>\",\"PeriodicalId\":18066,\"journal\":{\"name\":\"Lung Cancer: Targets and Therapy\",\"volume\":\"16 \",\"pages\":\"1-9\"},\"PeriodicalIF\":5.1000,\"publicationDate\":\"2025-02-19\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11847431/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Lung Cancer: Targets and Therapy\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.2147/LCTT.S493835\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q1\",\"JCRName\":\"ONCOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Lung Cancer: Targets and Therapy","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.2147/LCTT.S493835","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q1","JCRName":"ONCOLOGY","Score":null,"Total":0}
Comprehensive Survey of AACR GENIE Database of Tumor Mutation Burden (TMB) Among All Three Classes (I, II, III) of BRAF Mutated (BRAF+) NSCLC.
Background: BRAF mutations are generally divided into three classes based on the different altered mechanism of activation.
Methods: We queried the public AACR GENIE database (version 13.1), which includes tumor mutation burden (TMB) data, to explore potential molecular differences among the three classes of non-small cell lung cancer (NSCLC).
Results: Out of 20,713 unique NSCLC patients, 324 (1.6%) were BRAF mutations positive (BRAF+) class I, 260 (1.3%) class II, and 236 (1.1%) class III. The distribution of patient characteristics, including sex, age, and race, remains uniform across the three classes. The median TMB (mt/MB) was 6.5, 9.5, and 10.3 for class I, II, and III, respectively. The mean TMB was 61.5 ± 366.1 for class I, 40.5 ± 156.2 for class II, and 129.4 ± 914.8 for class III. About 30.5% of BRAF V600E+ patients had TMB ≥ 10; 47.7% of class II had TMB ≥ 10; and 52.5% of class III had TMB ≥ 10. For those patients with TMB ≥ 10, the median TMB was 45, 28.9, 18.4 for class I, II, and III, respectively. For TMB ≥ 10 patients, TP53 mutation was the most common co-alterations across all 3 classes.
Conclusion: A substantial proportion of BRAF+ NSCLC patients exhibited a TMB ≥ 10, among all three classes of BRAF mutation classification, including BRAF V600E+ NSCLC. Class III mutations appeared to have the highest median TMB, followed by class II, and then class I.