抗菌肽的深度学习:计算模型和数据库

IF 5.3 2区 化学 Q1 CHEMISTRY, MEDICINAL
Xiangrun Zhou, Guixia Liu*, Shuyuan Cao and Ji Lv*, 
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引用次数: 0

摘要

抗菌肽是对抗抗菌素耐药性的一种很有前途的策略。然而,抗菌肽的实验发现既费时又费力。近年来,计算技术(尤其是深度学习)的发展为抗菌肽预测提供了新的机遇。已经提出了各种计算模型来预测抗菌肽。在这篇综述中,我们重点介绍了抗菌肽预测的深度学习模型。我们首先收集和总结了抗菌肽的现有数据资源。随后,我们总结了现有的抗菌肽深度学习模型,并讨论了它们的局限性和挑战。本研究旨在帮助计算生物学家设计更好的抗菌肽预测深度学习模型。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Deep Learning for Antimicrobial Peptides: Computational Models and Databases

Deep Learning for Antimicrobial Peptides: Computational Models and Databases

Antimicrobial peptides are a promising strategy to combat antimicrobial resistance. However, the experimental discovery of antimicrobial peptides is both time-consuming and laborious. In recent years, the development of computational technologies (especially deep learning) has provided new opportunities for antimicrobial peptide prediction. Various computational models have been proposed to predict antimicrobial peptide. In this review, we focus on deep learning models for antimicrobial peptide prediction. We first collected and summarized available data resources for antimicrobial peptides. Subsequently, we summarized existing deep learning models for antimicrobial peptides and discussed their limitations and challenges. This study aims to help computational biologists design better deep learning models for antimicrobial peptide prediction.

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来源期刊
CiteScore
9.80
自引率
10.70%
发文量
529
审稿时长
1.4 months
期刊介绍: The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery. Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field. As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.
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