{"title":"昆虫分类学中的“初步物种假说”述评:一个全球数据和公平基础设施的视角。","authors":"Sharif Islam","doi":"10.3897/BDJ.13.e141562","DOIUrl":null,"url":null,"abstract":"<p><p>What if early taxonomic findings were treated like preprints, open to iterative improvement or managed with practices from the open-source community, such as Git branching, merging and patch management? Prompted by Buckley's article <i>Charting a Future for Entomological Taxonomy in New Zealand</i> (2024), this commentary explores these possibilities in the context of biodiversity informatics. In response to the need for rapid, scalable biodiversity monitoring, Buckley introduces preliminary species hypotheses (PSH) as a bridge between quick identification tools and the rigorous Linnaean system, leveraging DNA barcoding and AI-assisted image recognition to produce provisional classifications that can later be validated. Expanding on Buckley's framework, this commentary emphasises the critical role of data linking, versioning and integration to support evolving taxonomic data. Borrowing from software and open-source practices, I explore the idea of managing PSH with an infrastructure that treats each taxonomic update as a versioned \"commit\", which can be tracked, refined and integrated over time. Drawing insights from FAIR (Findable, Accessible, Interoperable, Reusable) principles and Digital Extended Specimens, I identify infrastructure requirements for PSH, including robust data standards, persistent identifiers and interoperability to support global biodiversity repositories. Additionally, Taxonomic Data Objects offer a model for dynamically integrating PSH into adaptable taxonomies that can evolve with new data and tools. By positioning PSH within an open, infrastructure-focused framework, this commentary advocates for scalable, hypothesis-driven biodiversity data that meets modern conservation needs, bridging traditional and emerging practices in taxonomy.</p>","PeriodicalId":55994,"journal":{"name":"Biodiversity Data Journal","volume":"13 ","pages":"e141562"},"PeriodicalIF":1.0000,"publicationDate":"2025-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11833303/pdf/","citationCount":"0","resultStr":"{\"title\":\"Commentary on \\\"Preliminary Species Hypotheses\\\" in Entomological Taxonomy: A Global Data and FAIR Infrastructure Perspective.\",\"authors\":\"Sharif Islam\",\"doi\":\"10.3897/BDJ.13.e141562\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>What if early taxonomic findings were treated like preprints, open to iterative improvement or managed with practices from the open-source community, such as Git branching, merging and patch management? Prompted by Buckley's article <i>Charting a Future for Entomological Taxonomy in New Zealand</i> (2024), this commentary explores these possibilities in the context of biodiversity informatics. In response to the need for rapid, scalable biodiversity monitoring, Buckley introduces preliminary species hypotheses (PSH) as a bridge between quick identification tools and the rigorous Linnaean system, leveraging DNA barcoding and AI-assisted image recognition to produce provisional classifications that can later be validated. Expanding on Buckley's framework, this commentary emphasises the critical role of data linking, versioning and integration to support evolving taxonomic data. Borrowing from software and open-source practices, I explore the idea of managing PSH with an infrastructure that treats each taxonomic update as a versioned \\\"commit\\\", which can be tracked, refined and integrated over time. Drawing insights from FAIR (Findable, Accessible, Interoperable, Reusable) principles and Digital Extended Specimens, I identify infrastructure requirements for PSH, including robust data standards, persistent identifiers and interoperability to support global biodiversity repositories. Additionally, Taxonomic Data Objects offer a model for dynamically integrating PSH into adaptable taxonomies that can evolve with new data and tools. 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引用次数: 0
摘要
如果早期的分类学发现像预印本一样被对待,开放给迭代改进,或者用开源社区的实践来管理,比如Git分支、合并和补丁管理,会怎么样?受巴克利的文章《描绘新西兰昆虫分类学的未来》(2024)的启发,这篇评论在生物多样性信息学的背景下探讨了这些可能性。为了响应快速、可扩展的生物多样性监测的需求,Buckley引入了初步物种假设(PSH),作为快速识别工具和严格的林奈系统之间的桥梁,利用DNA条形码和人工智能辅助图像识别来产生临时分类,随后可以进行验证。扩展巴克利的框架,这篇评论强调了数据链接、版本控制和集成的关键作用,以支持不断发展的分类数据。借鉴软件和开源实践,我探索了使用基础设施管理PSH的想法,该基础设施将每个分类法更新视为版本化的“提交”,可以随着时间的推移进行跟踪、改进和集成。根据FAIR(可查找、可访问、可互操作、可重用)原则和数字扩展样本的见解,我确定了PSH的基础设施要求,包括稳健的数据标准、持久的标识符和互操作性,以支持全球生物多样性存储库。此外,Taxonomic Data Objects提供了一个模型,用于将PSH动态集成到可随新数据和工具发展的适应性分类法中。通过将PSH定位在一个开放的、以基础设施为中心的框架中,本评论倡导可扩展的、假设驱动的生物多样性数据,以满足现代保护需求,在分类学中架起传统和新兴实践的桥梁。
Commentary on "Preliminary Species Hypotheses" in Entomological Taxonomy: A Global Data and FAIR Infrastructure Perspective.
What if early taxonomic findings were treated like preprints, open to iterative improvement or managed with practices from the open-source community, such as Git branching, merging and patch management? Prompted by Buckley's article Charting a Future for Entomological Taxonomy in New Zealand (2024), this commentary explores these possibilities in the context of biodiversity informatics. In response to the need for rapid, scalable biodiversity monitoring, Buckley introduces preliminary species hypotheses (PSH) as a bridge between quick identification tools and the rigorous Linnaean system, leveraging DNA barcoding and AI-assisted image recognition to produce provisional classifications that can later be validated. Expanding on Buckley's framework, this commentary emphasises the critical role of data linking, versioning and integration to support evolving taxonomic data. Borrowing from software and open-source practices, I explore the idea of managing PSH with an infrastructure that treats each taxonomic update as a versioned "commit", which can be tracked, refined and integrated over time. Drawing insights from FAIR (Findable, Accessible, Interoperable, Reusable) principles and Digital Extended Specimens, I identify infrastructure requirements for PSH, including robust data standards, persistent identifiers and interoperability to support global biodiversity repositories. Additionally, Taxonomic Data Objects offer a model for dynamically integrating PSH into adaptable taxonomies that can evolve with new data and tools. By positioning PSH within an open, infrastructure-focused framework, this commentary advocates for scalable, hypothesis-driven biodiversity data that meets modern conservation needs, bridging traditional and emerging practices in taxonomy.
Biodiversity Data JournalAgricultural and Biological Sciences-Ecology, Evolution, Behavior and Systematics
CiteScore
2.20
自引率
7.70%
发文量
283
审稿时长
6 weeks
期刊介绍:
Biodiversity Data Journal (BDJ) is a community peer-reviewed, open-access, comprehensive online platform, designed to accelerate publishing, dissemination and sharing of biodiversity-related data of any kind. All structural elements of the articles – text, morphological descriptions, occurrences, data tables, etc. – will be treated and stored as DATA, in accordance with the Data Publishing Policies and Guidelines of Pensoft Publishers.
The journal will publish papers in biodiversity science containing taxonomic, floristic/faunistic, morphological, genomic, phylogenetic, ecological or environmental data on any taxon of any geological age from any part of the world with no lower or upper limit to manuscript size.