从默克分子力场(MMFF)开始的神经网络精确预测ωB97X-D/6-31G*平衡几何

IF 5.3 2区 化学 Q1 CHEMISTRY, MEDICINAL
Thomas Hehre, Philip Klunzinger, Bernard Deppmeier, William Ohlinger, Warren Hehre
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引用次数: 0

摘要

从默克分子力场(MMFF)几何形状开始,制定了一个基于神经网络的模型,以密切再现有机分子的ωB97X-D/6-31G*平衡几何形状。该模型包括训练600万分子的能量和力计算,分子量范围从200到600 amu,对应于ωB97X-D/6- 31g *和MMFF平衡几何形状以及偏离这些几何形状的小偏差。422种未参与训练的天然产物,分子量范围从200到691 amu,用于评估神经网络模型对键长,键角和二面角的变化,以及使用神经网络中的平衡几何图形代替ωB97X-D/6-31G*几何图形导致的质子和13C化学位移的变化。神经网络将计算时间减少了两个或两个以上的数量级。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Accurate Prediction of ωB97X-D/6-31G* Equilibrium Geometries from a Neural Net Starting from Merck Molecular Force Field (MMFF) Molecular Mechanics Geometries.

Starting from Merck Molecular Force Field (MMFF) geometries, a neural-net based model has been formulated to closely reproduce ωB97X-D/6-31G* equilibrium geometries for organic molecules. The model involves training to >6 million energy and force calculations for molecules with molecular weights ranging from 200 to 600 amu, corresponding to both ωB97X-D/6-31G* and MMFF equilibrium geometries as well as small deviations away from these geometries. 422 natural products not involved in training with molecular weights ranging from 200 to 691 amu have been used to assess the neural net model against changes in bond lengths, bond angles, and dihedral angles, as well as against changes in proton and 13C chemical shifts resulting from using equilibrium geometries from the neural-net in lieu of geometries from ωB97X-D/6-31G*. The neural net reduces calculation times by two or more orders of magnitude.

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来源期刊
CiteScore
9.80
自引率
10.70%
发文量
529
审稿时长
1.4 months
期刊介绍: The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery. Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field. As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.
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