{"title":"Molecular dynamics study on enhancing the structural and mechanical properties of biomimetic DNA and RNA nanotubes using polyamines","authors":"Ehsan Torkan, Mehdi Salmani-Tehrani","doi":"10.1016/j.cplett.2025.141968","DOIUrl":null,"url":null,"abstract":"<div><div>Artificially synthesized nucleic acid nanotubes have piqued the interest of researchers because of their potential applications in nanotechnology. However, the low stability and mechanical characteristics of these nanostructures still limit several possible applications. This study describes how coating DNA nanotubes (DNTs) and RNA nanotubes (RNTs) with polyamine molecules improves their structural and mechanical properties. Through computational studies, including quantum calculations and molecular dynamics (MD) simulations, we examined the dynamic behavior of DNT and RNT in the presence of polyamines. Our MD analyses revealed notable improvements in the structural stability and mechanical properties of DNT and RNT when polyamines were absorbed.</div></div>","PeriodicalId":273,"journal":{"name":"Chemical Physics Letters","volume":"866 ","pages":"Article 141968"},"PeriodicalIF":2.8000,"publicationDate":"2025-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Chemical Physics Letters","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0009261425001083","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
Molecular dynamics study on enhancing the structural and mechanical properties of biomimetic DNA and RNA nanotubes using polyamines
Artificially synthesized nucleic acid nanotubes have piqued the interest of researchers because of their potential applications in nanotechnology. However, the low stability and mechanical characteristics of these nanostructures still limit several possible applications. This study describes how coating DNA nanotubes (DNTs) and RNA nanotubes (RNTs) with polyamine molecules improves their structural and mechanical properties. Through computational studies, including quantum calculations and molecular dynamics (MD) simulations, we examined the dynamic behavior of DNT and RNT in the presence of polyamines. Our MD analyses revealed notable improvements in the structural stability and mechanical properties of DNT and RNT when polyamines were absorbed.
期刊介绍:
Chemical Physics Letters has an open access mirror journal, Chemical Physics Letters: X, sharing the same aims and scope, editorial team, submission system and rigorous peer review.
Chemical Physics Letters publishes brief reports on molecules, interfaces, condensed phases, nanomaterials and nanostructures, polymers, biomolecular systems, and energy conversion and storage.
Criteria for publication are quality, urgency and impact. Further, experimental results reported in the journal have direct relevance for theory, and theoretical developments or non-routine computations relate directly to experiment. Manuscripts must satisfy these criteria and should not be minor extensions of previous work.