黄绿杆菌bchQ突变体叶绿体中细菌叶绿素c的构象动力学。

IF 2.9 2区 化学 Q3 CHEMISTRY, PHYSICAL
The Journal of Physical Chemistry B Pub Date : 2025-02-27 Epub Date: 2025-02-16 DOI:10.1021/acs.jpcb.4c04731
Lolita Dsouza, Karthick Babu Sai Sankar Gupta, Xinmeng Li, Vesna Erić, Yusen Luo, Annemarie Huijser, Thomas L C Jansen, Francesco Buda, Alfred R Holzwarth, Donald A Bryant, Andrei Gurinov, G J Agur Sevink, Huub J M de Groot
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引用次数: 0

摘要

与普遍认为细菌叶绿素(BChl)运动在叶绿体组装中基本不存在的观点相反,基于物理的建模指出了激子转移的大循环纳米尺度振动运动的关键作用。为了在实验上阐明这种运动,需要成分均匀性和高灵敏度。我们专注于从bchQ突变体中获得具有显著增强结构同质性的均匀13C标记的绿体制剂。利用旋转回声双共振(REDOR)表征了BChl分子的振动运动,此外,通过一维和二维偶极和基于标量的MAS NMR测量研究了温度对BChl分子内特定功能的影响。结果表明,随着温度的降低,BChls的尾部和侧链逐渐冻结。然而,通过测量从REDOR数据集获得的5C-H偶极耦合强度分析的振动运动在不同温度下持续存在。REDOR模拟结果表明,当偶极耦合强度为17.5±0.5 kHz时,振荡的减相频率与实验结果吻合较好,明显小于刚性极限下的22.7 kHz。根据两个位置的跳跃模型,我们得到了在θ = 48±4°角处的BChl振动采样的估计,证实了与NMR测量时间相比,大周期确实在较短的时间尺度上经历了显著的振动运动。这一发现充分定量支持了早期MD模拟估计的BChl大周期所表现出的主要旋转运动。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Conformational Dynamics of Bacteriochlorophyll <i>c</i> in Chlorosomes from the <i>bchQ</i> Mutant of <i>Chlorobaculum tepidum</i>.

Conformational Dynamics of Bacteriochlorophyll <i>c</i> in Chlorosomes from the <i>bchQ</i> Mutant of <i>Chlorobaculum tepidum</i>.

Conformational Dynamics of Bacteriochlorophyll <i>c</i> in Chlorosomes from the <i>bchQ</i> Mutant of <i>Chlorobaculum tepidum</i>.

Conformational Dynamics of Bacteriochlorophyll c in Chlorosomes from the bchQ Mutant of Chlorobaculum tepidum.

In contrast to the common viewpoint that bacteriochlorophyll (BChl) motion is largely absent within the chlorosome assembly, physics-based modeling points to a crucial role of the nanoscale librational motion of the macrocycle for the transfer of excitons. To elucidate this motion experimentally, compositional uniformity and high sensitivity are required. We focused on uniformly 13C labeled chlorosome preparations from the bchQ mutant Chlorobaculum tepidum with significantly enhanced structural homogeneity. The librational motion is characterized using Rotational Echo DOuble Resonance (REDOR), and in addition, the impact of temperature on specific functionalities within BChl molecules is studied with 1-dimensional and 2-dimensional dipolar and scalar-based MAS NMR measurements. Results show the gradual freezing of the tails and side chains of the BChls with decreasing temperature. However, the librational motion analyzed by measuring the 5C-H dipolar coupling strength obtained from REDOR data sets persists at different temperatures. REDOR simulations show a close match to the experimental dephasing frequency of oscillation for a dipolar coupling strength of 17.5 ± 0.5 kHz which is considerably less than the dipolar coupling strength of 22.7 kHz in the rigid limit. Following a two-site jump model, we arrive at an estimate for BChl libration sampling at an angle of θ = 48 ± 4°, corroborating that the macrocycle indeed experiences significant librational motion on a time scale that is short compared to the NMR measurement time. This finding is in full quantitative support of the dominant rotational motion exhibited by the BChl macrocycle estimated from early MD simulations.

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来源期刊
CiteScore
5.80
自引率
9.10%
发文量
965
审稿时长
1.6 months
期刊介绍: An essential criterion for acceptance of research articles in the journal is that they provide new physical insight. Please refer to the New Physical Insights virtual issue on what constitutes new physical insight. Manuscripts that are essentially reporting data or applications of data are, in general, not suitable for publication in JPC B.
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