从螺旋图时间序列中检测和早期预测慢性阻塞性肺疾病的深度学习。

IF 3.5 2区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Shuhao Mei, Xin Li, Yuxi Zhou, Jiahao Xu, Yong Zhang, Yuxuan Wan, Shan Cao, Qinghao Zhao, Shijia Geng, Junqing Xie, Shengyong Chen, Shenda Hong
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引用次数: 0

摘要

慢性阻塞性肺病(COPD)是一种以气流阻塞为特征的慢性肺部疾病。目前的诊断方法主要依赖于识别肺活量测定法(容量-流量时间序列)中的突出特征来检测COPD,但它们并不擅长基于细微数据模式预测未来COPD风险。在这项研究中,我们引入了一种新的基于深度学习的方法,DeepSpiro,旨在早期预测未来COPD风险。DeepSpiro由四个关键组件组成:spirosmooth用于稳定体积-流量曲线,SpiroEncoder用于通过不同长度的关键补丁捕获体积变异性模式,SpiroExplainer用于整合异构数据并通过体积关注解释预测,SpiroPredictor用于基于关键补丁凹度预测未确诊高危患者的疾病风险,预测范围为1-5年,甚至更长。在英国生物银行数据集上进行评估,DeepSpiro在COPD检测方面的AUC为0.8328,对未来COPD风险(p值)具有很强的预测能力
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Deep learning for detecting and early predicting chronic obstructive pulmonary disease from spirogram time series.

Chronic Obstructive Pulmonary Disease (COPD) is a chronic lung condition characterized by airflow obstruction. Current diagnostic methods primarily rely on identifying prominent features in spirometry (Volume-Flow time series) to detect COPD, but they are not adept at predicting future COPD risk based on subtle data patterns. In this study, we introduce a novel deep learning-based approach, DeepSpiro, aimed at the early prediction of future COPD risk. DeepSpiro consists of four key components: SpiroSmoother for stabilizing the Volume-Flow curve, SpiroEncoder for capturing volume variability-pattern through key patches of varying lengths, SpiroExplainer for integrating heterogeneous data and explaining predictions through volume attention, and SpiroPredictor for predicting the disease risk of undiagnosed high-risk patients based on key patch concavity, with prediction horizons of 1-5 years, or even longer. Evaluated on the UK Biobank dataset, DeepSpiro achieved an AUC of 0.8328 for COPD detection and demonstrated strong predictive performance for future COPD risk (p-value < 0.001). In summary, DeepSpiro can effectively predict the long-term progression of COPD disease.

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来源期刊
NPJ Systems Biology and Applications
NPJ Systems Biology and Applications Mathematics-Applied Mathematics
CiteScore
5.80
自引率
0.00%
发文量
46
审稿时长
8 weeks
期刊介绍: npj Systems Biology and Applications is an online Open Access journal dedicated to publishing the premier research that takes a systems-oriented approach. The journal aims to provide a forum for the presentation of articles that help define this nascent field, as well as those that apply the advances to wider fields. We encourage studies that integrate, or aid the integration of, data, analyses and insight from molecules to organisms and broader systems. Important areas of interest include not only fundamental biological systems and drug discovery, but also applications to health, medical practice and implementation, big data, biotechnology, food science, human behaviour, broader biological systems and industrial applications of systems biology. We encourage all approaches, including network biology, application of control theory to biological systems, computational modelling and analysis, comprehensive and/or high-content measurements, theoretical, analytical and computational studies of system-level properties of biological systems and computational/software/data platforms enabling such studies.
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