X. Ma, Y. Yang, J. Zhou, Z. Li, X. Hong, S. Jin, D. Wang
{"title":"经典氢键和非共价相互作用构建的两种吡啶和有机羧酸三维超分子盐的晶体学特征、合成研究和Hirshfeld表面分析","authors":"X. Ma, Y. Yang, J. Zhou, Z. Li, X. Hong, S. Jin, D. Wang","doi":"10.1134/S0022476625010019","DOIUrl":null,"url":null,"abstract":"<p>Preparation, X-ray crystal structure, Fourier transform infrared (FTIR) spectroscopy, and elemental analysis of complexes <b>1</b>, <b>2</b> from the pyridine and the mono- and dicarboxylic acids are reported. XRD and FTIR analysis demonstrate that both belong to the organic salt. The salt <b>1</b> crystallizes in the triclinic, space group <span>\\(P\\bar{1}\\)</span>, with <i>a</i> = 7.271(3) Å, <i>b</i> = 9.548(4) Å, <i>c</i> = 14.698(7) Å, α = 78.435(6)°, β = 85.975(7)°, γ = 71.492(6)°, <i>V</i> = 948.0(8) Å<sup>3</sup>, <i>Z</i> = 2. The salt <b>2</b> crystallizes in the orthorhombic, space group <i>P</i>2<sub>1</sub>2<sub>1</sub>2<sub>1</sub>, with <i>a</i> = 7.9476(6) Å, <i>b</i> = 11.6756(9) Å, <i>c</i> = 25.686(2) Å, α = β = γ = 90°, <i>V</i> = 2383.4(3) Å<sup>3</sup>, <i>Z</i> = 4. In this study, the pyridine at <b>1</b>, <b>2</b> were both involved in the classical ionic N–H⋯O H-bonds. The O–H⋯O H-bonds were also present in both salts. Apart from the classical H-bonds, the auxiliary interactions of CH⋯O, CH<sub>3</sub>–O, CH<sub>3</sub>–CH<sub>3,</sub> CH–π, and O–π also helped the stabilization and expansion of the whole high-dimensional (3D) packings. Hirshfeld surface analysis provides additional views into the prevalence of the various short contacts in the crystal structure. On account of the subtle balance of the various nonbonding associations the synthons <span>\\(R_{2}^{2}\\)</span>(7), <span>\\(R_{2}^{2}\\)</span>(10), <span>\\(R_{3}^{2}\\)</span>(8), <span>\\(R_{3}^{2}\\)</span>(10), <span>\\(R_{3}^{3}\\)</span>(9), <span>\\(R_{3}^{3}\\)</span>(19), <span>\\(R_{4}^{3}\\)</span>(15), <span>\\(R_{4}^{4}\\)</span>(17), <span>\\(R_{5}^{4}\\)</span>(12) and <span>\\(R_{6}^{4}\\)</span>(18) were noted at the salts. For the combination of the classical H-bonds plus the various non-covalent contacts, the salts adopted the 3D net. In conclusion, we have shown that 3D structures can be constructed by the collective non-covalent interactions.</p>","PeriodicalId":668,"journal":{"name":"Journal of Structural Chemistry","volume":"66 1","pages":"1 - 15"},"PeriodicalIF":1.4000,"publicationDate":"2025-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Crystallographic Features, Synthon Investigation and Hirshfeld Surface Analysis of Two 3D Supramolecular Salts of Pyridine and Organic Carboxylic Acids Constructed by Classical H-Bonds and Some Noncovalent Interactions\",\"authors\":\"X. Ma, Y. Yang, J. Zhou, Z. Li, X. Hong, S. Jin, D. Wang\",\"doi\":\"10.1134/S0022476625010019\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Preparation, X-ray crystal structure, Fourier transform infrared (FTIR) spectroscopy, and elemental analysis of complexes <b>1</b>, <b>2</b> from the pyridine and the mono- and dicarboxylic acids are reported. XRD and FTIR analysis demonstrate that both belong to the organic salt. The salt <b>1</b> crystallizes in the triclinic, space group <span>\\\\(P\\\\bar{1}\\\\)</span>, with <i>a</i> = 7.271(3) Å, <i>b</i> = 9.548(4) Å, <i>c</i> = 14.698(7) Å, α = 78.435(6)°, β = 85.975(7)°, γ = 71.492(6)°, <i>V</i> = 948.0(8) Å<sup>3</sup>, <i>Z</i> = 2. The salt <b>2</b> crystallizes in the orthorhombic, space group <i>P</i>2<sub>1</sub>2<sub>1</sub>2<sub>1</sub>, with <i>a</i> = 7.9476(6) Å, <i>b</i> = 11.6756(9) Å, <i>c</i> = 25.686(2) Å, α = β = γ = 90°, <i>V</i> = 2383.4(3) Å<sup>3</sup>, <i>Z</i> = 4. In this study, the pyridine at <b>1</b>, <b>2</b> were both involved in the classical ionic N–H⋯O H-bonds. The O–H⋯O H-bonds were also present in both salts. Apart from the classical H-bonds, the auxiliary interactions of CH⋯O, CH<sub>3</sub>–O, CH<sub>3</sub>–CH<sub>3,</sub> CH–π, and O–π also helped the stabilization and expansion of the whole high-dimensional (3D) packings. Hirshfeld surface analysis provides additional views into the prevalence of the various short contacts in the crystal structure. On account of the subtle balance of the various nonbonding associations the synthons <span>\\\\(R_{2}^{2}\\\\)</span>(7), <span>\\\\(R_{2}^{2}\\\\)</span>(10), <span>\\\\(R_{3}^{2}\\\\)</span>(8), <span>\\\\(R_{3}^{2}\\\\)</span>(10), <span>\\\\(R_{3}^{3}\\\\)</span>(9), <span>\\\\(R_{3}^{3}\\\\)</span>(19), <span>\\\\(R_{4}^{3}\\\\)</span>(15), <span>\\\\(R_{4}^{4}\\\\)</span>(17), <span>\\\\(R_{5}^{4}\\\\)</span>(12) and <span>\\\\(R_{6}^{4}\\\\)</span>(18) were noted at the salts. For the combination of the classical H-bonds plus the various non-covalent contacts, the salts adopted the 3D net. In conclusion, we have shown that 3D structures can be constructed by the collective non-covalent interactions.</p>\",\"PeriodicalId\":668,\"journal\":{\"name\":\"Journal of Structural Chemistry\",\"volume\":\"66 1\",\"pages\":\"1 - 15\"},\"PeriodicalIF\":1.4000,\"publicationDate\":\"2025-02-12\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Structural Chemistry\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://link.springer.com/article/10.1134/S0022476625010019\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"CHEMISTRY, INORGANIC & NUCLEAR\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Structural Chemistry","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1134/S0022476625010019","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"CHEMISTRY, INORGANIC & NUCLEAR","Score":null,"Total":0}
引用次数: 0
摘要
本文报道了吡啶、一羧酸和二羧酸配合物1,2的制备、x射线晶体结构、傅里叶红外光谱和元素分析。XRD和FTIR分析表明,两者均属于有机盐。盐1在三斜空间群\(P\bar{1}\)中结晶,a = 7.271(3) Å, b = 9.548(4) Å, c = 14.698(7) Å, α = 78.435(6)°,β = 85.975(7)°,γ = 71.492(6)°,V = 948.0(8) Å3, Z = 2。盐2在正交晶系P212121空间群中结晶,a = 7.9476(6) Å, b = 11.6756(9) Å, c = 25.686(2) Å, α = β = γ = 90°,V = 2383.4(3) Å3, Z = 4。在这项研究中,1,2上的吡啶都参与了经典离子N-H⋯O氢键。O - h⋯O - h键也存在于两种盐中。除了经典的氢键外,CH⋯O、CH3-O、CH3-CH3、CH -π和O -π的辅助相互作用也有助于整个高维(3D)填料的稳定和膨胀。赫希菲尔德表面分析提供了更多的观点,以了解晶体结构中各种短接触的普遍性。由于各种非键结合的微妙平衡,在盐中发现了\(R_{2}^{2}\)(7)、\(R_{2}^{2}\)(10)、\(R_{3}^{2}\)(8)、\(R_{3}^{2}\)(10)、\(R_{3}^{3}\)(9)、\(R_{3}^{3}\)(19)、\(R_{4}^{3}\)(15)、\(R_{4}^{4}\)(17)、\(R_{5}^{4}\)(12)和\(R_{6}^{4}\)(18)合成子。对于经典氢键和各种非共价接触的结合,盐采用三维网。总之,我们已经证明了三维结构可以通过集体非共价相互作用来构建。
Crystallographic Features, Synthon Investigation and Hirshfeld Surface Analysis of Two 3D Supramolecular Salts of Pyridine and Organic Carboxylic Acids Constructed by Classical H-Bonds and Some Noncovalent Interactions
Preparation, X-ray crystal structure, Fourier transform infrared (FTIR) spectroscopy, and elemental analysis of complexes 1, 2 from the pyridine and the mono- and dicarboxylic acids are reported. XRD and FTIR analysis demonstrate that both belong to the organic salt. The salt 1 crystallizes in the triclinic, space group \(P\bar{1}\), with a = 7.271(3) Å, b = 9.548(4) Å, c = 14.698(7) Å, α = 78.435(6)°, β = 85.975(7)°, γ = 71.492(6)°, V = 948.0(8) Å3, Z = 2. The salt 2 crystallizes in the orthorhombic, space group P212121, with a = 7.9476(6) Å, b = 11.6756(9) Å, c = 25.686(2) Å, α = β = γ = 90°, V = 2383.4(3) Å3, Z = 4. In this study, the pyridine at 1, 2 were both involved in the classical ionic N–H⋯O H-bonds. The O–H⋯O H-bonds were also present in both salts. Apart from the classical H-bonds, the auxiliary interactions of CH⋯O, CH3–O, CH3–CH3, CH–π, and O–π also helped the stabilization and expansion of the whole high-dimensional (3D) packings. Hirshfeld surface analysis provides additional views into the prevalence of the various short contacts in the crystal structure. On account of the subtle balance of the various nonbonding associations the synthons \(R_{2}^{2}\)(7), \(R_{2}^{2}\)(10), \(R_{3}^{2}\)(8), \(R_{3}^{2}\)(10), \(R_{3}^{3}\)(9), \(R_{3}^{3}\)(19), \(R_{4}^{3}\)(15), \(R_{4}^{4}\)(17), \(R_{5}^{4}\)(12) and \(R_{6}^{4}\)(18) were noted at the salts. For the combination of the classical H-bonds plus the various non-covalent contacts, the salts adopted the 3D net. In conclusion, we have shown that 3D structures can be constructed by the collective non-covalent interactions.
期刊介绍:
Journal is an interdisciplinary publication covering all aspects of structural chemistry, including the theory of molecular structure and chemical bond; the use of physical methods to study the electronic and spatial structure of chemical species; structural features of liquids, solutions, surfaces, supramolecular systems, nano- and solid materials; and the crystal structure of solids.