利用集合变量和Jarzynski-Crooks路径对亚稳态系统进行采样

IF 3.8 2区 物理与天体物理 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
C. Schönle , M. Gabrié , T. Lelièvre , G. Stoltz
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引用次数: 0

摘要

研究了高维多模态目标概率测度的采样问题。我们假设一个好的提议内核只移动一个子集的自由度(也称为集体变量)是已知的先验的。例如,这个提议内核可以使用规范化流[32]、[27]、[16]来构建。我们展示了如何将移动从集体变量空间扩展到全空间,以及如何实现一个接受-拒绝步骤,以获得关于目标概率度量的可逆链。接受-拒绝步骤不需要知道集合变量中原始测度的边际(即知道自由能)。所得到的算法允许有几种变体,其中一些非常接近先前文献中提出的方法,特别是[3],[29],[6],[7],[31]。我们展示了如何用Jarzynski-Crooks等式中出现的工作来表示获得的接受率,至少对于某些变体。数值实例证明了该方法在各种简单测试用例上的有效性,并允许我们比较算法的变体。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Sampling metastable systems using collective variables and Jarzynski–Crooks paths
We consider the problem of sampling a high dimensional multimodal target probability measure. We assume that a good proposal kernel to move only a subset of the degrees of freedoms (also known as collective variables) is known a priori. This proposal kernel can for example be built using normalizing flows [32], [27], [16]. We show how to extend the move from the collective variable space to the full space and how to implement an accept-reject step in order to get a reversible chain with respect to a target probability measure. The accept-reject step does not require to know the marginal of the original measure in the collective variable (namely to know the free energy). The obtained algorithm admits several variants, some of them being very close to methods which have been proposed previously in the literature, in particular in [3], [29], [6], [7], [31]. We show how the obtained acceptance ratio can be expressed in terms of the work which appears in the Jarzynski–Crooks equality, at least for some variants. Numerical illustrations demonstrate the efficiency of the approach on various simple test cases and allow us to compare the variants of the algorithm.
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来源期刊
Journal of Computational Physics
Journal of Computational Physics 物理-计算机:跨学科应用
CiteScore
7.60
自引率
14.60%
发文量
763
审稿时长
5.8 months
期刊介绍: Journal of Computational Physics thoroughly treats the computational aspects of physical problems, presenting techniques for the numerical solution of mathematical equations arising in all areas of physics. The journal seeks to emphasize methods that cross disciplinary boundaries. The Journal of Computational Physics also publishes short notes of 4 pages or less (including figures, tables, and references but excluding title pages). Letters to the Editor commenting on articles already published in this Journal will also be considered. Neither notes nor letters should have an abstract.
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