11-顺式和全反式视网膜席夫碱S0-S1和S0-T1能隙的机械调节

IF 2.9 2区 化学 Q3 CHEMISTRY, PHYSICAL
Alejandro Jodra,  and , Luis Manuel Frutos*, 
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引用次数: 0

摘要

视网膜希夫碱是一种具有重要生物学意义的发色团,因为它负责在视紫红质中捕获阳光,视紫红质是在各种生物体中发现的光活性蛋白。此外,在不同的蛋白质中,这种发色团受到各种机械力的影响,从而改变了其结构,从而改变了其性质。为了彻底了解视网膜激发能的机械响应极限,我们开发了一个简单的一阶形式来量化发色团对施加的外力的最佳机械响应(在几十个pN的数量级上)。此外,利用一种算法来探索势能面,分析了对较大力的响应。可以得出结论,视网膜希夫碱表现出明显的机械响应,最佳的力和位移涉及某些典型的低频坐标,表现出S1和T1状态之间的差异,以及11-顺式和全反式异构体之间的差异。此外,排除了使用机械力机械调节键长交替的可能性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Mechanical Modulation of S0–S1 and S0–T1 Energy Gaps of 11-cis and All-trans Retinal Schiff Bases

Mechanical Modulation of S0–S1 and S0–T1 Energy Gaps of 11-cis and All-trans Retinal Schiff Bases

The retinal Schiff base is a chromophore of significant biological relevance, as it is responsible for capturing sunlight in rhodopsins, which are photoactive proteins found in various living organisms. Additionally, this chromophore is subjected to various mechanical forces in different proteins, which alter its structure and, consequently, its properties. To thoroughly understand the mechanical response limits of the retinal excitation energy, a simple first-order formalism has been developed to quantify the chromophore’s optimal mechanical response to applied external forces (on the order of tens of pN). Additionally, the response to larger forces is analyzed by using an algorithm to explore the potential energy surfaces. It can be concluded that the retinal Schiff base exhibits a significant mechanical response and that the optimal forces and displacements involve certain coordinates typically of low frequency, showing differences between the S1 and T1 states, as well as between the 11-cis and all-trans isomers. Additionally, the possibility of mechanically modulating the bond length alternation using mechanical forces is ruled out.

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来源期刊
CiteScore
5.80
自引率
9.10%
发文量
965
审稿时长
1.6 months
期刊介绍: An essential criterion for acceptance of research articles in the journal is that they provide new physical insight. Please refer to the New Physical Insights virtual issue on what constitutes new physical insight. Manuscripts that are essentially reporting data or applications of data are, in general, not suitable for publication in JPC B.
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