从二次动力学同位素效应和Hammett关联分析氢化物隧穿就绪态的刚度:与动力学同位素效应的温度依赖性有关

IF 1.9 4区 化学 Q2 CHEMISTRY, ORGANIC
Mingxuan Bai, Grishma Singh, Yun Lu
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引用次数: 0

摘要

最近关于酶突变对h隧穿反应初级动力学同位素效应(1°KIEs)影响的研究表明,体系越刚性,KIEs的温度依赖性越弱,同位素活化能差(∆Ea = EaD−EaH)越小。在文献中,一个更严格的系统被定义为在生产反应物配合物(prc)和隧道就绪态(TRSs)中存在更短、更密集的氢供体-受体距离(DADs)。研究DADPRC/DADTRS与∆Ea的关系有助于验证现有h隧模型或指导新理论的发展。在之前的一篇文章中,我们利用氢化物受体(NAD+类似物)上的Hammett相关性提出了用于定性分析DADTRS顺序的TRS电子结构。在本文中,我们选择了一对这样的体系,并在氢化物供体(NADH类似物)上使用二级(2°)KIEs来获得分子水平上的定量DADTRS信息。计算TRS结构,计算对应的2°ky并拟合观测值,提取DADTRS数据。还计算了PRC结构。DADPRC/DADTRS信息与Hammett相关分析得出的刚性顺序一致,DADPRC/DADTRS与∆Ea之间的相关性与酶系统中的观察结果一致。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Rigidity Analysis of Hydride Tunneling-Ready States From Secondary Kinetic Isotope Effects and Hammett Correlations: Relating to the Temperature Dependence of Kinetic Isotope Effects

Rigidity Analysis of Hydride Tunneling-Ready States From Secondary Kinetic Isotope Effects and Hammett Correlations: Relating to the Temperature Dependence of Kinetic Isotope Effects

Recent study on the effects of enzyme mutations on the primary kinetic isotope effects (1° KIEs) of H-tunneling reactions revealed that a more rigid system results in a weaker temperature dependence of KIEs, indicated by a smaller isotopic activation energy difference (∆Ea = EaD − EaH). In literature, a more rigid system has been defined by the presence of shorter, more densely populated hydrogen donor-acceptor distances (DADs) in both the productive reactant complexes (PRCs) and the tunneling-ready states (TRSs). Studying the relationship between DADPRC/DADTRS and ∆Ea can help validate existing H-tunneling models or guide the development of new theories. In a previous publication, we employed Hammett correlations on hydride acceptors (NAD+ analogues) to propose TRS electronic structures for qualitative analysis of DADTRS order. In this paper, we selected a pair of such systems and used secondary (2°) KIEs on the hydride donor (NADH analogue) to obtain quantitative DADTRS information at the molecular level. TRS structures were computed, and the corresponding 2° KIEs were calculated and fitted to the observed values to extract DADTRS data. PRC structures were also computed. The DADPRC/DADTRS information aligns with the rigidity order derived from Hammett correlation analysis, and the correlation between DADPRC/DADTRS and ∆Ea is consistent with observations in enzyme systems.

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来源期刊
CiteScore
3.60
自引率
11.10%
发文量
161
审稿时长
2.3 months
期刊介绍: The Journal of Physical Organic Chemistry is the foremost international journal devoted to the relationship between molecular structure and chemical reactivity in organic systems. It publishes Research Articles, Reviews and Mini Reviews based on research striving to understand the principles governing chemical structures in relation to activity and transformation with physical and mathematical rigor, using results derived from experimental and computational methods. Physical Organic Chemistry is a central and fundamental field with multiple applications in fields such as molecular recognition, supramolecular chemistry, catalysis, photochemistry, biological and material sciences, nanotechnology and surface science.
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