{"title":"用于胚胎卵裂球检测和计数的AG-RetinaNet","authors":"Wenju Zhou, Ouafa Talha, Xiaofei Han, Qiang Liu, Yuan Xu, Zhenbo Zhang, Naitong Yuan","doi":"10.1002/ima.70034","DOIUrl":null,"url":null,"abstract":"<div>\n \n <p>Embryo morphology assessment is crucial for determining embryo viability in assisted reproductive technology. Traditional manual evaluation, while currently the primary method, is time-consuming, resource-intensive, and prone to inconsistencies due to the complex analysis of morphological parameters such as cell shape, size, and blastomere count. For rapid and accurate recognition and quantification of blastomeres in embryo images, Attention Gated-RetinaNet (AG-RetinaNet) model is proposed in this article. AG-RetinaNet combines an attention block between the backbone network and the Feature Pyramid Network to overcome the difficulties posed by overlapping blastomeres and morphological changes in embryo shape. The proposed model, trained on a dataset of human embryo images at different cell stages, uses ResNet50 and ResNet101 as backbones for performance comparison. Experimental results demonstrate its competitive performance against state-of-the-art detection models, achieving 95.8% average precision while balancing detection accuracy and computational efficiency. Specifically, the AG-RetinaNet achieves 83.08% precision, 91.13% sensitivity, 90.91% specificity, and an F1-score of 86.92% under optimized Intersection Over Union and confidence thresholds, effectively detecting and counting blastomeres across various grades. The comparison between these results and the manual annotations of embryologists confirms that our model has the potential to improve and streamline the workflow of embryologists in clinical practice.</p>\n </div>","PeriodicalId":14027,"journal":{"name":"International Journal of Imaging Systems and Technology","volume":"35 1","pages":""},"PeriodicalIF":3.0000,"publicationDate":"2025-01-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"An AG-RetinaNet for Embryonic Blastomeres Detection and Counting\",\"authors\":\"Wenju Zhou, Ouafa Talha, Xiaofei Han, Qiang Liu, Yuan Xu, Zhenbo Zhang, Naitong Yuan\",\"doi\":\"10.1002/ima.70034\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div>\\n \\n <p>Embryo morphology assessment is crucial for determining embryo viability in assisted reproductive technology. Traditional manual evaluation, while currently the primary method, is time-consuming, resource-intensive, and prone to inconsistencies due to the complex analysis of morphological parameters such as cell shape, size, and blastomere count. For rapid and accurate recognition and quantification of blastomeres in embryo images, Attention Gated-RetinaNet (AG-RetinaNet) model is proposed in this article. AG-RetinaNet combines an attention block between the backbone network and the Feature Pyramid Network to overcome the difficulties posed by overlapping blastomeres and morphological changes in embryo shape. The proposed model, trained on a dataset of human embryo images at different cell stages, uses ResNet50 and ResNet101 as backbones for performance comparison. Experimental results demonstrate its competitive performance against state-of-the-art detection models, achieving 95.8% average precision while balancing detection accuracy and computational efficiency. Specifically, the AG-RetinaNet achieves 83.08% precision, 91.13% sensitivity, 90.91% specificity, and an F1-score of 86.92% under optimized Intersection Over Union and confidence thresholds, effectively detecting and counting blastomeres across various grades. The comparison between these results and the manual annotations of embryologists confirms that our model has the potential to improve and streamline the workflow of embryologists in clinical practice.</p>\\n </div>\",\"PeriodicalId\":14027,\"journal\":{\"name\":\"International Journal of Imaging Systems and Technology\",\"volume\":\"35 1\",\"pages\":\"\"},\"PeriodicalIF\":3.0000,\"publicationDate\":\"2025-01-24\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International Journal of Imaging Systems and Technology\",\"FirstCategoryId\":\"94\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1002/ima.70034\",\"RegionNum\":4,\"RegionCategory\":\"计算机科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"ENGINEERING, ELECTRICAL & ELECTRONIC\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International Journal of Imaging Systems and Technology","FirstCategoryId":"94","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/ima.70034","RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ENGINEERING, ELECTRICAL & ELECTRONIC","Score":null,"Total":0}
引用次数: 0
摘要
胚胎形态评估是辅助生殖技术中确定胚胎生存能力的关键。传统的人工评估虽然是目前的主要方法,但由于对细胞形状、大小和卵裂球计数等形态学参数的复杂分析,费时、资源密集,而且容易产生不一致性。为了快速准确地识别和定量胚胎图像中的卵裂球,本文提出了Attention gate - retinanet (AG-RetinaNet)模型。AG-RetinaNet结合了骨干网络和特征金字塔网络之间的注意阻滞,克服了卵裂球重叠和胚胎形态改变带来的困难。该模型在不同细胞阶段的人类胚胎图像数据集上进行训练,使用ResNet50和ResNet101作为主干进行性能比较。实验结果表明,在平衡检测精度和计算效率的同时,该算法的平均精度达到95.8%,与目前最先进的检测模型相比具有竞争力。AG-RetinaNet在优化的Intersection Over Union和置信度阈值下,准确率达到83.08%,灵敏度91.13%,特异性90.91%,f1评分86.92%,能够有效检测和计数不同级别的卵裂球。这些结果与胚胎学家的手工注释之间的比较证实了我们的模型在临床实践中有可能改善和简化胚胎学家的工作流程。
An AG-RetinaNet for Embryonic Blastomeres Detection and Counting
Embryo morphology assessment is crucial for determining embryo viability in assisted reproductive technology. Traditional manual evaluation, while currently the primary method, is time-consuming, resource-intensive, and prone to inconsistencies due to the complex analysis of morphological parameters such as cell shape, size, and blastomere count. For rapid and accurate recognition and quantification of blastomeres in embryo images, Attention Gated-RetinaNet (AG-RetinaNet) model is proposed in this article. AG-RetinaNet combines an attention block between the backbone network and the Feature Pyramid Network to overcome the difficulties posed by overlapping blastomeres and morphological changes in embryo shape. The proposed model, trained on a dataset of human embryo images at different cell stages, uses ResNet50 and ResNet101 as backbones for performance comparison. Experimental results demonstrate its competitive performance against state-of-the-art detection models, achieving 95.8% average precision while balancing detection accuracy and computational efficiency. Specifically, the AG-RetinaNet achieves 83.08% precision, 91.13% sensitivity, 90.91% specificity, and an F1-score of 86.92% under optimized Intersection Over Union and confidence thresholds, effectively detecting and counting blastomeres across various grades. The comparison between these results and the manual annotations of embryologists confirms that our model has the potential to improve and streamline the workflow of embryologists in clinical practice.
期刊介绍:
The International Journal of Imaging Systems and Technology (IMA) is a forum for the exchange of ideas and results relevant to imaging systems, including imaging physics and informatics. The journal covers all imaging modalities in humans and animals.
IMA accepts technically sound and scientifically rigorous research in the interdisciplinary field of imaging, including relevant algorithmic research and hardware and software development, and their applications relevant to medical research. The journal provides a platform to publish original research in structural and functional imaging.
The journal is also open to imaging studies of the human body and on animals that describe novel diagnostic imaging and analyses methods. Technical, theoretical, and clinical research in both normal and clinical populations is encouraged. Submissions describing methods, software, databases, replication studies as well as negative results are also considered.
The scope of the journal includes, but is not limited to, the following in the context of biomedical research:
Imaging and neuro-imaging modalities: structural MRI, functional MRI, PET, SPECT, CT, ultrasound, EEG, MEG, NIRS etc.;
Neuromodulation and brain stimulation techniques such as TMS and tDCS;
Software and hardware for imaging, especially related to human and animal health;
Image segmentation in normal and clinical populations;
Pattern analysis and classification using machine learning techniques;
Computational modeling and analysis;
Brain connectivity and connectomics;
Systems-level characterization of brain function;
Neural networks and neurorobotics;
Computer vision, based on human/animal physiology;
Brain-computer interface (BCI) technology;
Big data, databasing and data mining.