多孔纳米石墨烯线性链的计算分析及其分子表征。

IF 2.5 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
S. Prabhu, M. Arulperumjothi, S. Salu, Bibin K. Jose
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引用次数: 0

摘要

背景:多孔纳米石墨烯是一种二维排列的碳的同素异形体,由于其高载流子迁移率、柔韧性、透明度、高表面积、导电性和化学稳定性,作为一种纳米材料,在电子、能源存储、医疗保健和环境清理等众多行业中具有多种潜在用途,已经引起了人们的极大关注。基本的多孔纳米石墨烯以线性形式组装形成正在讨论的多孔纳米烯链(HNC)。为了在各种应用中充分利用它,必须理解在纳米尺度上指导其行为的基本思想;为此,我们利用切割方法找到了这种多孔纳米石墨烯链的各种拓扑指标。由于拓扑指数是一种强大的数学工具,将分子结构与化学、物理和生物特性联系起来,因此它们在化学、制药研究、环境科学和材料科学等各个领域都是必不可少的。方法:随着标准定义对此类计算变得越来越复杂,切割方法对于计算大型结构中的拓扑指数至关重要。在这项研究中,我们应用切割方法计算孔洞纳米石墨烯结构的每个拓扑指数,这涉及到大量的求和。利用MATLAB软件对这些计算进行简化。为了在多孔纳米石墨烯的任何维度上生成每个顶点的DDSV(距离度序列向量),我们利用NEWGRAPH接口。然后使用Python代码分析分配给每个顶点的dsvs。此外,利用MATLAB代码对所考虑的HNCs拓扑指标的解析公式得到的数值结果进行了验证。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Computational analysis of linear chain of holey nanographene and their molecular characterizations

Context

Holey nanographene, an allotrope of carbon arranged in two dimensions, has gained remarkable attention as a nanomaterial with several potential uses in numerous industries, such as electronics, energy storage, healthcare, and environmental cleanup, because of its high carrier mobility, flexibility, transparency, high surface area, conductivity, and chemical stability. The fundamental holey nanographene is assembled in a linear form to create the holey nanographene chain (HNC) that is being discussed. To fully utilize it in various applications, it is essential to comprehend the basic ideas guiding its behavior at the nanoscale; for that, we find various topological indices for this holey nanographene chain using the cut method. Because topological indices are a robust mathematical tool that links molecular structure with chemical, physical, and biological properties, they are essential in diverse areas, namely chemistry, pharmaceutical research, environmental science, and materials science

Methods

The cut method is essential for calculating topological indices in large structures as standard definitions become increasingly complex for such computations. In this study, we apply the cut method to compute each topological index for holey nanographene structures, which involves extensive summations. MATLAB software is employed to simplify these calculations. To generate the DDSV (Distance Degree Sequence Vector) for each vertex within any dimension of holey nanographene, we utilize the NEWGRAPH interface. Python code is then used to analyze the DDSVs assigned to each vertex. Additionally, MATLAB code is applied to validate the numerical results derived from analytical formulae for the topological indices of the HNCs under consideration

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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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