PEDRA-EFB0:基于贴片嵌入和双残余注意的深度学习的结直肠癌预测。

IF 2.6 4区 医学 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Zihao Zhao, Hao Wang, Dinghui Wu, Qibing Zhu, Xueping Tan, Shudong Hu, Yuxi Ge
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引用次数: 0

摘要

在计算机辅助诊断系统中,使用深度学习从CT扫描中精确提取结直肠癌的特征对于有效的预后至关重要。然而,现有的卷积神经网络难以捕获远程依赖关系和上下文信息,导致CT特征提取不完整。为了解决这个问题,PEDRA-EFB0架构集成了补丁嵌入和双残余注意机制,以增强结直肠癌CT扫描的特征提取和生存预测。补丁嵌入方法将CT扫描处理成小块,生成全局表示的位置特征,并指导空间注意力计算。此外,上采样阶段的双重剩余注意机制选择性地结合了局部和全局特征,提高了CT数据的利用率。在此基础上,本文提出了一种结合自编码器和熵技术的特征选择算法,对高维数据进行编码压缩以减少冗余信息,并利用熵来评估特征的重要性,从而实现精确的特征选择。实验结果表明,PEDRA-EFB0模型在结直肠癌CT指标上优于传统方法,特别是在c指数、BS、MCC和AUC方面,提高了生存预测的准确性。我们的代码可以在https://github.com/smile0208z/PEDRA上免费获得。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
PEDRA-EFB0: colorectal cancer prognostication using deep learning with patch embeddings and dual residual attention.

In computer-aided diagnosis systems, precise feature extraction from CT scans of colorectal cancer using deep learning is essential for effective prognosis. However, existing convolutional neural networks struggle to capture long-range dependencies and contextual information, resulting in incomplete CT feature extraction. To address this, the PEDRA-EFB0 architecture integrates patch embeddings and a dual residual attention mechanism for enhanced feature extraction and survival prediction in colorectal cancer CT scans. A patch embedding method processes CT scans into patches, creating positional features for global representation and guiding spatial attention computation. Additionally, a dual residual attention mechanism during the upsampling stage selectively combines local and global features, enhancing CT data utilization. Furthermore, this paper proposes a feature selection algorithm that combines autoencoders and entropy technology, encoding and compressing high-dimensional data to reduce redundant information and using entropy to assess the importance of features, thereby achieving precise feature selection. Experimental results indicate the PEDRA-EFB0 model outperforms traditional methods on colorectal cancer CT metrics, notably in C-index, BS, MCC, and AUC, enhancing survival prediction accuracy. Our code is freely available at https://github.com/smile0208z/PEDRA .

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来源期刊
Medical & Biological Engineering & Computing
Medical & Biological Engineering & Computing 医学-工程:生物医学
CiteScore
6.00
自引率
3.10%
发文量
249
审稿时长
3.5 months
期刊介绍: Founded in 1963, Medical & Biological Engineering & Computing (MBEC) continues to serve the biomedical engineering community, covering the entire spectrum of biomedical and clinical engineering. The journal presents exciting and vital experimental and theoretical developments in biomedical science and technology, and reports on advances in computer-based methodologies in these multidisciplinary subjects. The journal also incorporates new and evolving technologies including cellular engineering and molecular imaging. MBEC publishes original research articles as well as reviews and technical notes. Its Rapid Communications category focuses on material of immediate value to the readership, while the Controversies section provides a forum to exchange views on selected issues, stimulating a vigorous and informed debate in this exciting and high profile field. MBEC is an official journal of the International Federation of Medical and Biological Engineering (IFMBE).
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