CTCNet:循环肿瘤细胞荧光图像的细粒度分类网络。

IF 2.6 4区 医学 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Juntao Wu, Han Wang, Yuman Nie, Yaoxiong Wang, Wei He, Guoxing Wang, Zeng Li, Jiajun Chen, Wenliang Xu
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引用次数: 0

摘要

外周血循环肿瘤细胞(CTCs)的识别和分类对于推进癌症诊断和预后至关重要。各种ctc亚型的复杂性,加上开发详尽数据集的困难,阻碍了这一专门领域的进展。迄今为止,还没有专门用于克服ctc分类挑战的方法。为了解决这一缺陷,我们开发了CTCDet,这是一个基于ctc独特病理特征精心注释的大规模数据集,旨在推进深度学习技术在肿瘤学研究中的应用。此外,我们介绍了CTCNet,这是一种创新的混合架构,融合了cnn和transformer的功能,以实现对CTCs的精确分类。该架构的特点是并行令牌混频器,它将局部窗口自关注与大核深度卷积相结合,增强了网络对复杂通道和空间关系的建模能力。此外,可变形大核注意(dlk - Attention)模块利用可变形卷积和大核操作来熟练地描述ctc的细微特征,从而大大提高了分类效率。对CTCDet数据集的综合评估验证了CTCNet的优越性能,证实了其在准确细胞分类方面优于其他一般方法的能力。此外,CTCNet在各种数据集上的泛化性得到了验证,建立了其鲁棒性和适用性。该方法具有一定的临床应用价值,可为辅助肿瘤的诊断和治疗提供一定的帮助。代码和数据可在https://github.com/JasonWu404/CTCs_Classification上获得。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
CTCNet: a fine-grained classification network for fluorescence images of circulating tumor cells.

The identification and categorization of circulating tumor cells (CTCs) in peripheral blood are imperative for advancing cancer diagnostics and prognostics. The intricacy of various CTCs subtypes, coupled with the difficulty in developing exhaustive datasets, has impeded progress in this specialized domain. To date, no methods have been dedicated exclusively to overcoming the classification challenges of CTCs. To address this deficit, we have developed CTCDet, a large-scale dataset meticulously annotated based on the distinctive pathological characteristics of CTCs, aimed at advancing the application of deep learning techniques in oncological research. Furthermore, we introduce CTCNet, an innovative hybrid architecture that merges the capabilities of CNNs and Transformers to achieve precise classification of CTCs. This architecture features the Parallel Token mixer, which integrates local window self-attention with large-kernel depthwise convolution, enhancing the network's ability to model intricate channel and spatial relationships. Additionally, the Deformable Large Kernel Attention (DLKAttention) module leverages deformable convolution and large-kernel operations to adeptly delineate the nuanced features of CTCs, substantially boosting classification efficacy. Comprehensive evaluations on the CTCDet dataset validate the superior performance of CTCNet, confirming its ability to outperform other general methods in accurate cell classification. Moreover, the generalizability of CTCNet has been established across various datasets, establishing its robustness and applicability. What is more, our proposed method can lead to clinical applications and provide some help in assisting cancer diagnosis and treatment. Code and Data are available at https://github.com/JasonWu404/CTCs_Classification .

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来源期刊
Medical & Biological Engineering & Computing
Medical & Biological Engineering & Computing 医学-工程:生物医学
CiteScore
6.00
自引率
3.10%
发文量
249
审稿时长
3.5 months
期刊介绍: Founded in 1963, Medical & Biological Engineering & Computing (MBEC) continues to serve the biomedical engineering community, covering the entire spectrum of biomedical and clinical engineering. The journal presents exciting and vital experimental and theoretical developments in biomedical science and technology, and reports on advances in computer-based methodologies in these multidisciplinary subjects. The journal also incorporates new and evolving technologies including cellular engineering and molecular imaging. MBEC publishes original research articles as well as reviews and technical notes. Its Rapid Communications category focuses on material of immediate value to the readership, while the Controversies section provides a forum to exchange views on selected issues, stimulating a vigorous and informed debate in this exciting and high profile field. MBEC is an official journal of the International Federation of Medical and Biological Engineering (IFMBE).
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