{"title":"三维金属(II)离子与呋喃之间形成阳离子-π/阳离子-孤对配合物的计算洞察力","authors":"Bapan Saha","doi":"10.1007/s00894-025-06279-x","DOIUrl":null,"url":null,"abstract":"<div><h3>Context</h3><p>Cation-π and cation-lone pair interactions between 3d-metal (II) ions [Fe(II), Co(II), Ni(II) and Cu(II)] and furan are explored in the formation of 1:1 and 1:2 type complexes. Both cation-π (IE<sub>gas</sub>\n= −192.27 to −312.65 kcal mol<sup>−1</sup>) and cation-lone pair (IE<sub>gas</sub>\n= −163.13 to −271.76 kcal mol<sup>−1</sup>) interactions are reasonably strong and lead to the formation of stable 1:1 and 1:2 type complexes in gas phase. The complexes are also stable in solvent phase, but their stability is reduced significantly in presence of solvent dielectrics, especially in ethanol, DMSO and water. Formation of the complexes is thermodynamically favourable (exothermic and spontaneous). Charge transfer (Δq = 0.62 to 1.92 e<sup>−</sup>), Laplacian of electron density (∇<sup>2</sup>ρ = 0.1435 to 0.6628 au) and total electron energy density (H(r) = −0.0019 to −0.0436 au) analysis have argued in favour of partial ionic and partial covalent character of the interactions.</p><h3>Methods</h3><p>Density functional theory (DFT) is exclusively used for the study. Polarizable continuum model (PCM) is used to perform solvent phase study. Natural bond orbital (NBO), quantum theory of atoms in molecules (QTAIM) and non-covalent interaction (NCI) analyses are performed for understanding other aspects of complex formation.</p></div>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"31 2","pages":""},"PeriodicalIF":2.1000,"publicationDate":"2025-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Computational insight into the formation of cation-π/cation-lone pair complexes between 3d-metal (II) ions and furan\",\"authors\":\"Bapan Saha\",\"doi\":\"10.1007/s00894-025-06279-x\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Context</h3><p>Cation-π and cation-lone pair interactions between 3d-metal (II) ions [Fe(II), Co(II), Ni(II) and Cu(II)] and furan are explored in the formation of 1:1 and 1:2 type complexes. Both cation-π (IE<sub>gas</sub>\\n= −192.27 to −312.65 kcal mol<sup>−1</sup>) and cation-lone pair (IE<sub>gas</sub>\\n= −163.13 to −271.76 kcal mol<sup>−1</sup>) interactions are reasonably strong and lead to the formation of stable 1:1 and 1:2 type complexes in gas phase. The complexes are also stable in solvent phase, but their stability is reduced significantly in presence of solvent dielectrics, especially in ethanol, DMSO and water. Formation of the complexes is thermodynamically favourable (exothermic and spontaneous). Charge transfer (Δq = 0.62 to 1.92 e<sup>−</sup>), Laplacian of electron density (∇<sup>2</sup>ρ = 0.1435 to 0.6628 au) and total electron energy density (H(r) = −0.0019 to −0.0436 au) analysis have argued in favour of partial ionic and partial covalent character of the interactions.</p><h3>Methods</h3><p>Density functional theory (DFT) is exclusively used for the study. Polarizable continuum model (PCM) is used to perform solvent phase study. Natural bond orbital (NBO), quantum theory of atoms in molecules (QTAIM) and non-covalent interaction (NCI) analyses are performed for understanding other aspects of complex formation.</p></div>\",\"PeriodicalId\":651,\"journal\":{\"name\":\"Journal of Molecular Modeling\",\"volume\":\"31 2\",\"pages\":\"\"},\"PeriodicalIF\":2.1000,\"publicationDate\":\"2025-01-21\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Molecular Modeling\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s00894-025-06279-x\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Modeling","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s00894-025-06279-x","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Computational insight into the formation of cation-π/cation-lone pair complexes between 3d-metal (II) ions and furan
Context
Cation-π and cation-lone pair interactions between 3d-metal (II) ions [Fe(II), Co(II), Ni(II) and Cu(II)] and furan are explored in the formation of 1:1 and 1:2 type complexes. Both cation-π (IEgas
= −192.27 to −312.65 kcal mol−1) and cation-lone pair (IEgas
= −163.13 to −271.76 kcal mol−1) interactions are reasonably strong and lead to the formation of stable 1:1 and 1:2 type complexes in gas phase. The complexes are also stable in solvent phase, but their stability is reduced significantly in presence of solvent dielectrics, especially in ethanol, DMSO and water. Formation of the complexes is thermodynamically favourable (exothermic and spontaneous). Charge transfer (Δq = 0.62 to 1.92 e−), Laplacian of electron density (∇2ρ = 0.1435 to 0.6628 au) and total electron energy density (H(r) = −0.0019 to −0.0436 au) analysis have argued in favour of partial ionic and partial covalent character of the interactions.
Methods
Density functional theory (DFT) is exclusively used for the study. Polarizable continuum model (PCM) is used to perform solvent phase study. Natural bond orbital (NBO), quantum theory of atoms in molecules (QTAIM) and non-covalent interaction (NCI) analyses are performed for understanding other aspects of complex formation.
期刊介绍:
The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling.
Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry.
Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.