Xiyuchen Yang, Meng Ye, Feng Wang, Xiaobing Yang, Xiangdong Gao, Juping Yu, Wei Liu
{"title":"基于 Bacteroides thetaiotaomicron 设计的用于体内诊断结肠炎的硝酸盐/亚硝酸盐生物传感器。","authors":"Xiyuchen Yang, Meng Ye, Feng Wang, Xiaobing Yang, Xiangdong Gao, Juping Yu, Wei Liu","doi":"10.1021/acssynbio.4c00602","DOIUrl":null,"url":null,"abstract":"<p><p><i>Bacteroides thetaiotaomicron</i> is a common microorganism in the human gut that has been linked to health benefits. Furthermore, it is an emerging synthetic biology chassis with the potential to be modified into diagnostic or therapeutic engineered probiotics. However, the absence of biological components limits its further applications. In this study, we developed an antiterminator microbial whole-cell biosensor (MWCB) based on <i>B. thetaiotaomicron</i>. The antiterminator-based element allows the chassis to detect colitis in mice by responding to nitrate and nitrite in an inflammatory environment. In particular, the nitrate/nitrite-inducible promoter was obtained by combining the constitutive promoter with the inducible terminator. Subsequently, the promoter and RBS were replaced to optimize a sensitive and specific response to nitrate/nitrite. A preliminary <i>in vitro</i> assessment was conducted to ascertain the functionality of the biosensor. Its <i>in vivo</i> sensing ability was evaluated in a chemically induced mouse model of ulcerative colitis (UC). The results demonstrated that the MWCB exhibited a robust response to colitis, with a notable positive correlation between the intensity of the response and the level of inflammation. This novel sensing element may provide a new avenue for the development of components for unconventional chassis, like <i>B. thetaiotaomicron</i>. It will also facilitate the development of engineered probiotics based on <i>B. thetaiotaomicron</i>, thereby providing patients with a wider range of medical treatment options.</p>","PeriodicalId":26,"journal":{"name":"ACS Synthetic Biology","volume":" ","pages":""},"PeriodicalIF":3.7000,"publicationDate":"2025-01-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"A Nitrate/Nitrite Biosensor Designed with an Antiterminator for <i>In Vivo</i> Diagnosis of Colitis Based on <i>Bacteroides thetaiotaomicron</i>.\",\"authors\":\"Xiyuchen Yang, Meng Ye, Feng Wang, Xiaobing Yang, Xiangdong Gao, Juping Yu, Wei Liu\",\"doi\":\"10.1021/acssynbio.4c00602\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><i>Bacteroides thetaiotaomicron</i> is a common microorganism in the human gut that has been linked to health benefits. Furthermore, it is an emerging synthetic biology chassis with the potential to be modified into diagnostic or therapeutic engineered probiotics. However, the absence of biological components limits its further applications. In this study, we developed an antiterminator microbial whole-cell biosensor (MWCB) based on <i>B. thetaiotaomicron</i>. The antiterminator-based element allows the chassis to detect colitis in mice by responding to nitrate and nitrite in an inflammatory environment. In particular, the nitrate/nitrite-inducible promoter was obtained by combining the constitutive promoter with the inducible terminator. Subsequently, the promoter and RBS were replaced to optimize a sensitive and specific response to nitrate/nitrite. A preliminary <i>in vitro</i> assessment was conducted to ascertain the functionality of the biosensor. Its <i>in vivo</i> sensing ability was evaluated in a chemically induced mouse model of ulcerative colitis (UC). The results demonstrated that the MWCB exhibited a robust response to colitis, with a notable positive correlation between the intensity of the response and the level of inflammation. This novel sensing element may provide a new avenue for the development of components for unconventional chassis, like <i>B. thetaiotaomicron</i>. It will also facilitate the development of engineered probiotics based on <i>B. thetaiotaomicron</i>, thereby providing patients with a wider range of medical treatment options.</p>\",\"PeriodicalId\":26,\"journal\":{\"name\":\"ACS Synthetic Biology\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":3.7000,\"publicationDate\":\"2025-01-12\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Synthetic Biology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1021/acssynbio.4c00602\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"BIOCHEMICAL RESEARCH METHODS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Synthetic Biology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1021/acssynbio.4c00602","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0
摘要
Bacteroides thetaiotaomicron 是人类肠道中的一种常见微生物,与健康益处有关。此外,它还是一种新兴的合成生物学底盘,有可能被改造成诊断或治疗用的工程益生菌。然而,生物成分的缺乏限制了它的进一步应用。在这项研究中,我们开发了一种基于 B. thetaiotaomicron 的抗溃疡微生物全细胞生物传感器(MWCB)。这种基于抗凋亡剂的元件使底盘能够在炎症环境中对硝酸盐和亚硝酸盐做出反应,从而检测小鼠的结肠炎。其中,硝酸盐/亚硝酸盐诱导型启动子是通过将组成型启动子与诱导型终止子相结合而获得的。随后,启动子和 RBS 被替换,以优化对硝酸盐/亚硝酸盐的敏感性和特异性反应。为了确定生物传感器的功能,对其进行了初步的体外评估。在化学诱导的小鼠溃疡性结肠炎(UC)模型中对其体内传感能力进行了评估。结果表明,MWCB 对结肠炎有很强的反应,其反应强度与炎症程度呈明显的正相关。这种新型传感元件可为开发非常规底盘(如 B. thetaiotaomicron)的组件提供新途径。它还将促进基于 B. thetaiotaomicron 的工程益生菌的开发,从而为患者提供更广泛的医疗选择。
A Nitrate/Nitrite Biosensor Designed with an Antiterminator for In Vivo Diagnosis of Colitis Based on Bacteroides thetaiotaomicron.
Bacteroides thetaiotaomicron is a common microorganism in the human gut that has been linked to health benefits. Furthermore, it is an emerging synthetic biology chassis with the potential to be modified into diagnostic or therapeutic engineered probiotics. However, the absence of biological components limits its further applications. In this study, we developed an antiterminator microbial whole-cell biosensor (MWCB) based on B. thetaiotaomicron. The antiterminator-based element allows the chassis to detect colitis in mice by responding to nitrate and nitrite in an inflammatory environment. In particular, the nitrate/nitrite-inducible promoter was obtained by combining the constitutive promoter with the inducible terminator. Subsequently, the promoter and RBS were replaced to optimize a sensitive and specific response to nitrate/nitrite. A preliminary in vitro assessment was conducted to ascertain the functionality of the biosensor. Its in vivo sensing ability was evaluated in a chemically induced mouse model of ulcerative colitis (UC). The results demonstrated that the MWCB exhibited a robust response to colitis, with a notable positive correlation between the intensity of the response and the level of inflammation. This novel sensing element may provide a new avenue for the development of components for unconventional chassis, like B. thetaiotaomicron. It will also facilitate the development of engineered probiotics based on B. thetaiotaomicron, thereby providing patients with a wider range of medical treatment options.
期刊介绍:
The journal is particularly interested in studies on the design and synthesis of new genetic circuits and gene products; computational methods in the design of systems; and integrative applied approaches to understanding disease and metabolism.
Topics may include, but are not limited to:
Design and optimization of genetic systems
Genetic circuit design and their principles for their organization into programs
Computational methods to aid the design of genetic systems
Experimental methods to quantify genetic parts, circuits, and metabolic fluxes
Genetic parts libraries: their creation, analysis, and ontological representation
Protein engineering including computational design
Metabolic engineering and cellular manufacturing, including biomass conversion
Natural product access, engineering, and production
Creative and innovative applications of cellular programming
Medical applications, tissue engineering, and the programming of therapeutic cells
Minimal cell design and construction
Genomics and genome replacement strategies
Viral engineering
Automated and robotic assembly platforms for synthetic biology
DNA synthesis methodologies
Metagenomics and synthetic metagenomic analysis
Bioinformatics applied to gene discovery, chemoinformatics, and pathway construction
Gene optimization
Methods for genome-scale measurements of transcription and metabolomics
Systems biology and methods to integrate multiple data sources
in vitro and cell-free synthetic biology and molecular programming
Nucleic acid engineering.