高斯态:具有高斯噪声约束的可变形医学图像配准。

IF 3.2 4区 医学 Q2 ENGINEERING, BIOMEDICAL
Biomedical Engineering Letters Pub Date : 2024-09-24 eCollection Date: 2025-01-01 DOI:10.1007/s13534-024-00428-6
Ranran Zhang, Shunbo Hu, Wenyin Zhang, Yuwen Wang, Zunrui Hu, Yongfang Wang, Dezhuang Kong, Hongchao Zhou, Meng Li, Desley Munashe Gurure, Yingying Wen, Chengchao Wang, Shiyu Liu
{"title":"高斯态:具有高斯噪声约束的可变形医学图像配准。","authors":"Ranran Zhang, Shunbo Hu, Wenyin Zhang, Yuwen Wang, Zunrui Hu, Yongfang Wang, Dezhuang Kong, Hongchao Zhou, Meng Li, Desley Munashe Gurure, Yingying Wen, Chengchao Wang, Shiyu Liu","doi":"10.1007/s13534-024-00428-6","DOIUrl":null,"url":null,"abstract":"<p><p>Deep learning-based image registration methods offer advantages of time efficiency and registration outcomes by automatically extracting enough image features. Currently, more and more scholars choose to use cascaded networks to achieve coarse-to-fine registration. Although cascaded networks take a lot of time in the training and inference stages, they can improve registration performance. In this study, we utilize the advantage of high registration performance of cascaded networks. Two VoxelMorph convolutional neural networks are cascaded together. The first VoxelMorph network outputs the dense deformation field of registration. The second network outputs a noisy deformation field, which serves to boost the registration performance by minimizing the error in comparison with Gaussian noise. At the same time, the Enhancement Features-encoder (EF-encoder) block is introduced in the encoder and decoder part of the network to achieve enhancement features functions by attention mechanism. This paper conducted experiments on LPBA40 and HBN datasets. The experimental results show that the Dice similarity coefficient, Average Symmetric Surface Distance, Structural similarity and Pearson correlation coefficient of GaussianMorph are better than those of VM, VM × 2 and TST-Net. Experimental results show that GaussianMorph can improve the registration accuracy.</p>","PeriodicalId":46898,"journal":{"name":"Biomedical Engineering Letters","volume":"15 1","pages":"105-115"},"PeriodicalIF":3.2000,"publicationDate":"2024-09-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11704120/pdf/","citationCount":"0","resultStr":"{\"title\":\"Gaussianmorph: deformable medical image registration with Gaussian noise constraints.\",\"authors\":\"Ranran Zhang, Shunbo Hu, Wenyin Zhang, Yuwen Wang, Zunrui Hu, Yongfang Wang, Dezhuang Kong, Hongchao Zhou, Meng Li, Desley Munashe Gurure, Yingying Wen, Chengchao Wang, Shiyu Liu\",\"doi\":\"10.1007/s13534-024-00428-6\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Deep learning-based image registration methods offer advantages of time efficiency and registration outcomes by automatically extracting enough image features. Currently, more and more scholars choose to use cascaded networks to achieve coarse-to-fine registration. Although cascaded networks take a lot of time in the training and inference stages, they can improve registration performance. In this study, we utilize the advantage of high registration performance of cascaded networks. Two VoxelMorph convolutional neural networks are cascaded together. The first VoxelMorph network outputs the dense deformation field of registration. The second network outputs a noisy deformation field, which serves to boost the registration performance by minimizing the error in comparison with Gaussian noise. At the same time, the Enhancement Features-encoder (EF-encoder) block is introduced in the encoder and decoder part of the network to achieve enhancement features functions by attention mechanism. This paper conducted experiments on LPBA40 and HBN datasets. The experimental results show that the Dice similarity coefficient, Average Symmetric Surface Distance, Structural similarity and Pearson correlation coefficient of GaussianMorph are better than those of VM, VM × 2 and TST-Net. Experimental results show that GaussianMorph can improve the registration accuracy.</p>\",\"PeriodicalId\":46898,\"journal\":{\"name\":\"Biomedical Engineering Letters\",\"volume\":\"15 1\",\"pages\":\"105-115\"},\"PeriodicalIF\":3.2000,\"publicationDate\":\"2024-09-24\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11704120/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Biomedical Engineering Letters\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://doi.org/10.1007/s13534-024-00428-6\",\"RegionNum\":4,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q2\",\"JCRName\":\"ENGINEERING, BIOMEDICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biomedical Engineering Letters","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1007/s13534-024-00428-6","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"ENGINEERING, BIOMEDICAL","Score":null,"Total":0}
引用次数: 0

摘要

基于深度学习的图像配准方法可以自动提取足够的图像特征,具有时间效率高、配准效果好的优点。目前,越来越多的学者选择使用级联网络来实现从粗到精的配准。虽然级联网络在训练和推理阶段花费了大量的时间,但它们可以提高配准性能。在本研究中,我们利用了级联网络高注册性能的优势。两个VoxelMorph卷积神经网络级联在一起。第一个VoxelMorph网络输出配准的密集变形场。第二个网络输出一个有噪声的变形场,与高斯噪声相比,该网络通过最小化误差来提高配准性能。同时,在网络的编码器和解码器部分引入增强特征编码器(EF-encoder)块,通过注意机制实现增强特征功能。本文在LPBA40和HBN数据集上进行了实验。实验结果表明,GaussianMorph的Dice相似系数、平均对称表面距离、结构相似度和Pearson相关系数均优于VM、VM x2和st - net。实验结果表明,该方法可以提高配准精度。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Gaussianmorph: deformable medical image registration with Gaussian noise constraints.

Deep learning-based image registration methods offer advantages of time efficiency and registration outcomes by automatically extracting enough image features. Currently, more and more scholars choose to use cascaded networks to achieve coarse-to-fine registration. Although cascaded networks take a lot of time in the training and inference stages, they can improve registration performance. In this study, we utilize the advantage of high registration performance of cascaded networks. Two VoxelMorph convolutional neural networks are cascaded together. The first VoxelMorph network outputs the dense deformation field of registration. The second network outputs a noisy deformation field, which serves to boost the registration performance by minimizing the error in comparison with Gaussian noise. At the same time, the Enhancement Features-encoder (EF-encoder) block is introduced in the encoder and decoder part of the network to achieve enhancement features functions by attention mechanism. This paper conducted experiments on LPBA40 and HBN datasets. The experimental results show that the Dice similarity coefficient, Average Symmetric Surface Distance, Structural similarity and Pearson correlation coefficient of GaussianMorph are better than those of VM, VM × 2 and TST-Net. Experimental results show that GaussianMorph can improve the registration accuracy.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Biomedical Engineering Letters
Biomedical Engineering Letters ENGINEERING, BIOMEDICAL-
CiteScore
6.80
自引率
0.00%
发文量
34
期刊介绍: Biomedical Engineering Letters (BMEL) aims to present the innovative experimental science and technological development in the biomedical field as well as clinical application of new development. The article must contain original biomedical engineering content, defined as development, theoretical analysis, and evaluation/validation of a new technique. BMEL publishes the following types of papers: original articles, review articles, editorials, and letters to the editor. All the papers are reviewed in single-blind fashion.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信