昆虫细胞色素P450数据库:遗传多样性、进化和功能的综合资源。

IF 5.5 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY
Hongxin Wu, Zhongsheng Li, Zichun Zhong, Yujing Guo, Liuyan He, Xiaoxia Xu, Yijun Mao, Deyu Tang, Wenqing Zhang, Fengliang Jin, Rui Pang
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引用次数: 0

摘要

昆虫是地球上数量最多、种类最多的动物物种,通过提供资源、传播疾病和破坏农业品种与人类有重要的相互作用。细胞色素P450单加氧酶(P450)是昆虫体内最重要的蛋白家族之一,参与外源代谢和解毒,包括化感化学物质、杀虫剂和环境污染物。为了更好地了解昆虫p450的进化和功能,支持杀虫剂的开发和应用,一个集成的生物信息学平台是非常必要的。在这里,我们展示了昆虫细胞色素P450数据库(ICPD, http://www.insectp450.net/),其中包含从公共数据库收集的66,477个P450,并使用标准化生物信息学协议从682种昆虫的基因组中预测。为每个物种构建了P450基因之间的系统发育关系。使用ESMFold预测数据库中所有P450蛋白的结构,然后使用WeView进行可视化。为确定P450蛋白的催化活性,提供了BLAST、均相建模和分子对接等Web服务。ICPD将有助于系统地研究昆虫P450互补体的进化和功能,并为指导杀虫剂的设计和应用提供有力的工具。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Insect Cytochrome P450 Database: An Integrated Resource of Genetic Diversity, Evolution and Function.

Insects, the most numerous and diverse group of animal species on Earth, have important interactions with humans through providing resources, transmitting diseases and damaging agricultural cultivars. Cytochrome P450 monooxygenases (P450s) are one of the most important protein families in insects implicated in the endogenous metabolism and detoxification of xenobiotics, including allelochemicals, insecticides and environmental pollutants. To better understand the evolution and function of insect P450s and support the development and application of insecticides for pest control, an integrated bioinformatics platform is highly desirable. Here, we present the Insect Cytochrome P450 database (ICPD, http://www.insectp450.net/), which contains 66,477 P450s collected from public databases and predicted from the genomes of 682 insect species using a standardised bioinformatics protocol. Phylogenetic relationships between P450 genes are constructed for each species. The structures of all P450 proteins in the database are predicted using ESMFold, then visualised using WeView. Web services, such as BLAST, homogeneous modelling and molecular docking, are provided for determining the catalytic activities of P450 proteins. The ICPD will facilitate systematic investigations of the evolution and functions of the complete insect P450 complement, and represents a powerful tool for guiding insecticide design and application.

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来源期刊
Molecular Ecology Resources
Molecular Ecology Resources 生物-进化生物学
CiteScore
15.60
自引率
5.20%
发文量
170
审稿时长
3 months
期刊介绍: Molecular Ecology Resources promotes the creation of comprehensive resources for the scientific community, encompassing computer programs, statistical and molecular advancements, and a diverse array of molecular tools. Serving as a conduit for disseminating these resources, the journal targets a broad audience of researchers in the fields of evolution, ecology, and conservation. Articles in Molecular Ecology Resources are crafted to support investigations tackling significant questions within these disciplines. In addition to original resource articles, Molecular Ecology Resources features Reviews, Opinions, and Comments relevant to the field. The journal also periodically releases Special Issues focusing on resource development within specific areas.
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