热力学性质预测的基于图的深度学习模型:目标定义、数据分布、特征和模型架构之间的相互作用。

IF 5.6 2区 化学 Q1 CHEMISTRY, MEDICINAL
Bowen Deng, Thijs Stuyver
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引用次数: 0

摘要

在这篇文章中,我们研究了目标定义、数据分布、特征化方法和基于图的深度学习模型的模型架构之间的相互作用,用于热力学性质预测。通过考虑5个精选的数据集,展示了元素组成、多样性、电荷状态和大小的多样性,我们检查了这些因素对模型准确性的影响。我们观察到,目标定义,即使用形成而不是原子化能/焓,是一个决定性因素,仔细选择特征化方法也是一个决定性因素。我们直接修改模型架构的尝试导致了更适度的,尽管不是可以忽略不计的,准确性的提高。值得注意的是,我们观察到分子水平的预测往往优于原子水平的增量预测,这与之前的发现形成了对比。总的来说,这项工作为开发具有更通用功能的健壮的基于图的热力学模型架构铺平了道路,即,架构可以在数据集和复合领域之间达到出色的准确性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Graph-Based Deep Learning Models for Thermodynamic Property Prediction: The Interplay between Target Definition, Data Distribution, Featurization, and Model Architecture.

In this contribution, we examine the interplay between target definition, data distribution, featurization approaches, and model architectures on graph-based deep learning models for thermodynamic property prediction. Through consideration of five curated data sets, exhibiting diversity in elemental composition, multiplicity, charge state, and size, we examine the impact of each of these factors on model accuracy. We observe that target definition, i.e., using formation instead of atomization energy/enthalpy, is a decisive factor, and so is a careful selection of the featurization approach. Our attempts at directly modifying model architectures result in more modest, though not negligible, accuracy gains. Remarkably, we observe that molecule-level predictions tend to outperform atom-level increment predictions, in contrast to previous findings. Overall, this work paves the way toward the development of robust graph-based thermodynamic model architectures with more universal capabilities, i.e., architectures that can reach excellent accuracy across data sets and compound domains.

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来源期刊
CiteScore
9.80
自引率
10.70%
发文量
529
审稿时长
1.4 months
期刊介绍: The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery. Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field. As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.
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