乳酸过氧化物酶与一氧化氮复合物在1.95 Å分辨率下的结构。

IF 3.2 4区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Ankit Maurya, Nabeel Ahmad, Pradeep Sharma, Sujata Sharma, T P Singh
{"title":"乳酸过氧化物酶与一氧化氮复合物在1.95 Å分辨率下的结构。","authors":"Ankit Maurya, Nabeel Ahmad, Pradeep Sharma, Sujata Sharma, T P Singh","doi":"10.1002/prot.26797","DOIUrl":null,"url":null,"abstract":"<p><p>Lactoperoxidase (LPO) is a heme-containing mammalian enzyme that is found in the extracellular fluids of animals including plasma, saliva, airway epithelial and nasal lining fluids, milk, tears, and gastric juices. LPO uses hydrogen peroxide (H<sub>2</sub>O<sub>2</sub>) to convert substrates into oxidized products. Previous structural studies have shown that H<sub>2</sub>O<sub>2</sub>, CO, and CN are bound to LPO at the distal heme cavity by coordinating with heme iron. The structure of the complex of LPO with NO shows that NO also binds to LPO at the distal heme cavity and forms a coordinate linkage with heme iron. The structure shows that the nitrogen atom of NO is linked to heme iron at a distance of 1.97 while the oxygen atom is attached to the N<sup>ε2</sup> atom of His109 at a distance of 2.23 Å. On the other hand, N atom of NO is located with an interatomic distance of 3.25 Å allowing a hydrogen-bonding interaction with the N<sup>ε2</sup> atom of Gln105. A comparison of the bindings of NO, CO, CN, and H<sub>2</sub>O<sub>2</sub> in coordination with heme iron indicates stereochemical compatibility of the distal heme cavity for the binding of diatomic molecules. However, notable differences are observed in their orientations in the distal heme cavity indicating functional differences. The bindings of NO, CO, and CN by coordinating with heme iron result in the inhibition of LPO while the binding of H<sub>2</sub>O<sub>2</sub> to heme iron produces an intermediate of LPO known as Compound I.</p>","PeriodicalId":56271,"journal":{"name":"Proteins-Structure Function and Bioinformatics","volume":" ","pages":""},"PeriodicalIF":3.2000,"publicationDate":"2025-01-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Structure of the Complex of Lactoperoxidase With Nitric Oxide at 1.95 Å Resolution.\",\"authors\":\"Ankit Maurya, Nabeel Ahmad, Pradeep Sharma, Sujata Sharma, T P Singh\",\"doi\":\"10.1002/prot.26797\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Lactoperoxidase (LPO) is a heme-containing mammalian enzyme that is found in the extracellular fluids of animals including plasma, saliva, airway epithelial and nasal lining fluids, milk, tears, and gastric juices. LPO uses hydrogen peroxide (H<sub>2</sub>O<sub>2</sub>) to convert substrates into oxidized products. Previous structural studies have shown that H<sub>2</sub>O<sub>2</sub>, CO, and CN are bound to LPO at the distal heme cavity by coordinating with heme iron. The structure of the complex of LPO with NO shows that NO also binds to LPO at the distal heme cavity and forms a coordinate linkage with heme iron. The structure shows that the nitrogen atom of NO is linked to heme iron at a distance of 1.97 while the oxygen atom is attached to the N<sup>ε2</sup> atom of His109 at a distance of 2.23 Å. On the other hand, N atom of NO is located with an interatomic distance of 3.25 Å allowing a hydrogen-bonding interaction with the N<sup>ε2</sup> atom of Gln105. A comparison of the bindings of NO, CO, CN, and H<sub>2</sub>O<sub>2</sub> in coordination with heme iron indicates stereochemical compatibility of the distal heme cavity for the binding of diatomic molecules. However, notable differences are observed in their orientations in the distal heme cavity indicating functional differences. The bindings of NO, CO, and CN by coordinating with heme iron result in the inhibition of LPO while the binding of H<sub>2</sub>O<sub>2</sub> to heme iron produces an intermediate of LPO known as Compound I.</p>\",\"PeriodicalId\":56271,\"journal\":{\"name\":\"Proteins-Structure Function and Bioinformatics\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":3.2000,\"publicationDate\":\"2025-01-02\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Proteins-Structure Function and Bioinformatics\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1002/prot.26797\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Proteins-Structure Function and Bioinformatics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1002/prot.26797","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

乳酸过氧化物酶(LPO)是一种含血红素的哺乳动物酶,存在于动物的细胞外液中,包括血浆、唾液、气道上皮和鼻粘膜液、牛奶、眼泪和胃液。LPO利用过氧化氢(H2O2)将底物转化为氧化产物。先前的结构研究表明,H2O2、CO和CN通过与血红素铁配合,在远端血红素腔与LPO结合。LPO与NO配合物的结构表明,NO也在远端血红素腔处与LPO结合,并与血红素铁形成配位键。结构表明NO的氮原子与血红素铁的连接距离为1.97,而氧原子与His109的Nε2原子的连接距离为2.23 Å。另一方面,NO的N原子的原子间距离为3.25 Å,允许与Gln105的Nε2原子发生氢键作用。通过对比NO、CO、CN和H2O2与血红素铁的结合,我们发现远端血红素腔对双原子分子的结合具有立体相容性。然而,它们在远端血红素腔中的取向存在显著差异,这表明它们在功能上存在差异。NO、CO和CN与血红素铁的结合导致LPO的抑制,而H2O2与血红素铁的结合产生LPO的中间体,称为化合物I。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Structure of the Complex of Lactoperoxidase With Nitric Oxide at 1.95 Å Resolution.

Lactoperoxidase (LPO) is a heme-containing mammalian enzyme that is found in the extracellular fluids of animals including plasma, saliva, airway epithelial and nasal lining fluids, milk, tears, and gastric juices. LPO uses hydrogen peroxide (H2O2) to convert substrates into oxidized products. Previous structural studies have shown that H2O2, CO, and CN are bound to LPO at the distal heme cavity by coordinating with heme iron. The structure of the complex of LPO with NO shows that NO also binds to LPO at the distal heme cavity and forms a coordinate linkage with heme iron. The structure shows that the nitrogen atom of NO is linked to heme iron at a distance of 1.97 while the oxygen atom is attached to the Nε2 atom of His109 at a distance of 2.23 Å. On the other hand, N atom of NO is located with an interatomic distance of 3.25 Å allowing a hydrogen-bonding interaction with the Nε2 atom of Gln105. A comparison of the bindings of NO, CO, CN, and H2O2 in coordination with heme iron indicates stereochemical compatibility of the distal heme cavity for the binding of diatomic molecules. However, notable differences are observed in their orientations in the distal heme cavity indicating functional differences. The bindings of NO, CO, and CN by coordinating with heme iron result in the inhibition of LPO while the binding of H2O2 to heme iron produces an intermediate of LPO known as Compound I.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Proteins-Structure Function and Bioinformatics
Proteins-Structure Function and Bioinformatics 生物-生化与分子生物学
CiteScore
5.90
自引率
3.40%
发文量
172
审稿时长
3 months
期刊介绍: PROTEINS : Structure, Function, and Bioinformatics publishes original reports of significant experimental and analytic research in all areas of protein research: structure, function, computation, genetics, and design. The journal encourages reports that present new experimental or computational approaches for interpreting and understanding data from biophysical chemistry, structural studies of proteins and macromolecular assemblies, alterations of protein structure and function engineered through techniques of molecular biology and genetics, functional analyses under physiologic conditions, as well as the interactions of proteins with receptors, nucleic acids, or other specific ligands or substrates. Research in protein and peptide biochemistry directed toward synthesizing or characterizing molecules that simulate aspects of the activity of proteins, or that act as inhibitors of protein function, is also within the scope of PROTEINS. In addition to full-length reports, short communications (usually not more than 4 printed pages) and prediction reports are welcome. Reviews are typically by invitation; authors are encouraged to submit proposed topics for consideration.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信