多性状全基因组分析在UK Biobank中鉴定出20个新的肌少症相关性状位点。

IF 3.3 3区 医学 Q2 ENDOCRINOLOGY & METABOLISM
Shu Ran, XiTong Lin, SiQi Wang, ZhuoQi Li, BaoLin Liu
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引用次数: 0

摘要

本研究旨在通过多性状全基因组分析,找出英国生物库(UKB)中与肌肉疏松症相关性状有关的新基因位点。为了找出与肌肉疏松症相关的新基因位点,我们整合了通常步行速度(UWP)和手握力(HGS)的全基因组关联研究(GWAS),进行了一项联合关联研究,即多性状全基因组分析(MTAG)。我们进行了全转录组关联研究(TWAS),以分析 MTAG 的结果与骨骼肌中已识别基因的 mRNA 表达数据的关系。此外,我们还利用加权基因共表达网络分析(WGCNA)和蛋白质-蛋白质相互作用(PPI)网络来探讨已识别基因与肌肉疏松症相关枢纽基因之间的关系。在全基因组显著性水平(GWS,p 5 × 10 - 8)上,我们发现了 15 个与 UWP 相关的新基因位点和 5 个与 HGS 相关的新基因位点。在 TWAS(p TWAS 6.659 × 10 - 6 , 0.05 / 7509)之后,我们发现了两个重要基因:PPP1R3A 位于 7q31.1,与 HGS 相关;ZBTB38 位于 3q23,与 UWP 相关。通过 WGCNA 获得了 11 个与肌肉疏松症枢纽基因相关的已鉴定基因。我们的研究结果为了解肌肉疏松症的生物学机制提供了新的视角,并发现了几个与肌肉疏松症相关的新基因,值得深入研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Multi-trait Genome-Wide Analysis Identified 20 Novel Loci for Sarcopenia-Related Traits in UK Biobank.

This study aims to identify novel loci associated with sarcopenia-related traits in UK Biobank (UKB) through multi-trait genome-wide analysis. To identify novel loci associated with sarcopenia, we integrated the genome-wide association studies (GWAS) of usual walking pace (UWP) and hand grip strength (HGS) to conduct a joint association study known as multi-trait analysis of GWAS (MTAG). We performed a transcriptome-wide association study (TWAS) to analyze the results of MTAG in relation to mRNA expression data for genes identified in skeletal muscle. Additionally, we utilized Weighted Gene Co-Expression Network Analysis (WGCNA) and Protein-Protein Interaction (PPI) networks to explore the relationships between the identified genes and hub genes related to sarcopenia. We identified 15 novel loci associated with UWP and 5 novel loci associated with HGS at the genome wide significance level (GWS, p < 5 × 10 - 8 ). After TWAS ( p TWAS < 6.659 × 10 - 6 , 0.05 / 7509 ), we found two significant genes: PPP1R3A, located at 7q31.1 and associated with HGS, and ZBTB38, located at 3q23 and associated with UWP. 11 identified genes associated with hub genes for sarcopenia were obtained through WGCNA. Our findings offer new insights into biological mechanisms underlying sarcopenia and identify several novel genes related to sarcopenia that warrant in-depth study.

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来源期刊
Calcified Tissue International
Calcified Tissue International 医学-内分泌学与代谢
CiteScore
8.00
自引率
2.40%
发文量
112
审稿时长
4-8 weeks
期刊介绍: Calcified Tissue International and Musculoskeletal Research publishes original research and reviews concerning the structure and function of bone, and other musculoskeletal tissues in living organisms and clinical studies of musculoskeletal disease. It includes studies of cell biology, molecular biology, intracellular signalling, and physiology, as well as research into the hormones, cytokines and other mediators that influence the musculoskeletal system. The journal also publishes clinical studies of relevance to bone disease, mineral metabolism, muscle function, and musculoskeletal interactions.
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