Courtney Whitcher , Victor G.D. Orrico , Santiago Ron , Mariana L. Lyra , Carla S. Cassini , Rodrigo B. Ferreira , Daniel Y.M. Nakamura , Pedro L.V. Peloso , Marco A. Rada , Mauricio Rivera-Correa , Marcelo J. Sturaro , Paula H. Valdujo , Célio F.B. Haddad , Taran Grant , Julian Faivovich , Alan Lemmon , Emily Moriarty Lemmon
{"title":"分布广泛的树蛙属的系统发育、生物地理学和生活史进化。","authors":"Courtney Whitcher , Victor G.D. Orrico , Santiago Ron , Mariana L. Lyra , Carla S. Cassini , Rodrigo B. Ferreira , Daniel Y.M. Nakamura , Pedro L.V. Peloso , Marco A. Rada , Mauricio Rivera-Correa , Marcelo J. Sturaro , Paula H. Valdujo , Célio F.B. Haddad , Taran Grant , Julian Faivovich , Alan Lemmon , Emily Moriarty Lemmon","doi":"10.1016/j.ympev.2024.108275","DOIUrl":null,"url":null,"abstract":"<div><div><em>Dendropsophus<!--> </em>is one of the most species-rich genera of hylid treefrogs. Recent studies integrating Sanger-generated mitochondrial and nuclear loci with phenomic characters (SP) have advanced understanding of this clade, but questions about its internal relationships and biogeographic history persist. To address these questions, we used anchored hybrid enrichment (AHE) to combine 432 nuclear loci for 78 taxa (72 % of species) with published data. Quantitatively, the impact of the AHE data was modest, with compositional differences in only three recognized clades and more than 80 % of the clades in the AHE + SP analyses also supported in the SP-only analyses. Nevertheless, the impact of AHE was crucial for resolving and increasing support for multiple nodes. We transferred one species of the former<!--> <em>D. ruschii<!--> </em>group to the<!--> <em>D. decipiens</em> <!-->group and redefined the<!--> <em>D. leucophyllatus<!--> </em>group to avoid paraphyly. We estimated divergence times to reconstruct the clade’s biogeographic history. We also examined evolution of oviposition sites and assessed its effect on lineage accumulation. <em>Dendropsophus<!--> </em>likely originated ∼ 57 mya, predating the Andean uplift, with some taxa showing dispersal patterns less constrained by ecological changes than previously thought.</div></div>","PeriodicalId":56109,"journal":{"name":"Molecular Phylogenetics and Evolution","volume":"204 ","pages":"Article 108275"},"PeriodicalIF":3.6000,"publicationDate":"2024-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Phylogenetics, biogeography, and life history evolution in the broadly distributed treefrog genus Dendropsophus (Anura: Hylidae: Hylinae)\",\"authors\":\"Courtney Whitcher , Victor G.D. Orrico , Santiago Ron , Mariana L. Lyra , Carla S. Cassini , Rodrigo B. Ferreira , Daniel Y.M. Nakamura , Pedro L.V. Peloso , Marco A. Rada , Mauricio Rivera-Correa , Marcelo J. Sturaro , Paula H. Valdujo , Célio F.B. Haddad , Taran Grant , Julian Faivovich , Alan Lemmon , Emily Moriarty Lemmon\",\"doi\":\"10.1016/j.ympev.2024.108275\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div><em>Dendropsophus<!--> </em>is one of the most species-rich genera of hylid treefrogs. Recent studies integrating Sanger-generated mitochondrial and nuclear loci with phenomic characters (SP) have advanced understanding of this clade, but questions about its internal relationships and biogeographic history persist. To address these questions, we used anchored hybrid enrichment (AHE) to combine 432 nuclear loci for 78 taxa (72 % of species) with published data. Quantitatively, the impact of the AHE data was modest, with compositional differences in only three recognized clades and more than 80 % of the clades in the AHE + SP analyses also supported in the SP-only analyses. Nevertheless, the impact of AHE was crucial for resolving and increasing support for multiple nodes. We transferred one species of the former<!--> <em>D. ruschii<!--> </em>group to the<!--> <em>D. decipiens</em> <!-->group and redefined the<!--> <em>D. leucophyllatus<!--> </em>group to avoid paraphyly. We estimated divergence times to reconstruct the clade’s biogeographic history. We also examined evolution of oviposition sites and assessed its effect on lineage accumulation. <em>Dendropsophus<!--> </em>likely originated ∼ 57 mya, predating the Andean uplift, with some taxa showing dispersal patterns less constrained by ecological changes than previously thought.</div></div>\",\"PeriodicalId\":56109,\"journal\":{\"name\":\"Molecular Phylogenetics and Evolution\",\"volume\":\"204 \",\"pages\":\"Article 108275\"},\"PeriodicalIF\":3.6000,\"publicationDate\":\"2024-12-24\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Molecular Phylogenetics and Evolution\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1055790324002677\",\"RegionNum\":1,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Molecular Phylogenetics and Evolution","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1055790324002677","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Phylogenetics, biogeography, and life history evolution in the broadly distributed treefrog genus Dendropsophus (Anura: Hylidae: Hylinae)
Dendropsophus is one of the most species-rich genera of hylid treefrogs. Recent studies integrating Sanger-generated mitochondrial and nuclear loci with phenomic characters (SP) have advanced understanding of this clade, but questions about its internal relationships and biogeographic history persist. To address these questions, we used anchored hybrid enrichment (AHE) to combine 432 nuclear loci for 78 taxa (72 % of species) with published data. Quantitatively, the impact of the AHE data was modest, with compositional differences in only three recognized clades and more than 80 % of the clades in the AHE + SP analyses also supported in the SP-only analyses. Nevertheless, the impact of AHE was crucial for resolving and increasing support for multiple nodes. We transferred one species of the former D. ruschii group to the D. decipiens group and redefined the D. leucophyllatus group to avoid paraphyly. We estimated divergence times to reconstruct the clade’s biogeographic history. We also examined evolution of oviposition sites and assessed its effect on lineage accumulation. Dendropsophus likely originated ∼ 57 mya, predating the Andean uplift, with some taxa showing dispersal patterns less constrained by ecological changes than previously thought.
期刊介绍:
Molecular Phylogenetics and Evolution is dedicated to bringing Darwin''s dream within grasp - to "have fairly true genealogical trees of each great kingdom of Nature." The journal provides a forum for molecular studies that advance our understanding of phylogeny and evolution, further the development of phylogenetically more accurate taxonomic classifications, and ultimately bring a unified classification for all the ramifying lines of life. Phylogeographic studies will be considered for publication if they offer EXCEPTIONAL theoretical or empirical advances.