基于大量转录组测序数据的高密度脂蛋白水平降低的寻常型银屑病生物标志物的分子机制研究

IF 4.2 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Ying Tu , Xiaoqing Fan , Xiaoli Wang, Jue Qi, Yanjie Chai, Li He
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引用次数: 0

摘要

研究发现,银屑病患者常出现严重的脂质代谢紊乱,包括高密度脂蛋白(HDL)水平下降。本研究最初通过收集探讨HDL水平变化对牛皮癣的影响。本研究采集了寻常型牛皮癣患者和HDL水平降低的寻常型牛皮癣患者的12份血液样本和9份皮肤样本,并进行了大量RNA测序。选择低HDL水平寻常型银屑病患者组织和血液样本中明确表达的基因,进一步探讨其在寻常型银屑病中的分子调控作用,以阐明银屑病的发病机制。从PN组中共获得421个血液特异性deg和143个皮肤特异性deg,这些基因在炎症和免疫系统相关的条件和途径中富集。此外,在血液和皮肤样本中筛选出具有相同表达模式的生物标志物。得到5个交叉的差异基因(METRNL、NDEL1、HLA-DRA、MZB1、MKRN3)。进一步预测了它们的功能。总之,我们的研究确定了牛皮癣中与低HDL水平相关的五种生物标志物。此外,我们的研究结果表明,银屑病中HDL水平的改变可能通过调节免疫反应和脂质代谢而加剧银屑病的临床表现。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Investigation into the molecular mechanisms of biomarkers in psoriasis vulgaris with reduced high-density lipoprotein levels based on bulk transcriptome sequencing data
It has been found that severe lipid metabolism disorders are often present in patients with Psoriasis, including decreased levels of high-density lipoprotein (HDL). This study initially explored the impact of HDL level variations on psoriasis by collecting. This study collected 12 blood samples and 9 skin samples from psoriasis vulgaris and psoriasis vulgaris with reduced HDL levels and performed bulk RNA sequencing. The genes expressed explicitly in both tissue and blood samples from psoriasis vulgaris patients with low HDL levels were selected to explore their molecular regulation in psoriasis vulgaris further, to elucidate the pathogenesis of psoriasis. A total of 421 specific DEGs in blood and 143 specific DEGs in skin from PN groups were obtained, and these genes were enriched in the terms and pathways related to inflammation and immune system. Also, biomarkers were screened out with same expression pattern in both blood and skin samples. Five intersecting differential genes (METRNL, NDEL1, HLA-DRA, MZB1, MKRN3) were obtained. Their function was further predicted. In conclusion, our research identified five biomarkers in psoriasis that are associated with low HDL levels. Furthermore, our findings revealed that alterations in HDL levels in psoriasis may exacerbate the clinical manifestations of psoriasis through regulation of immune response and lipid metabolism.
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来源期刊
CiteScore
12.30
自引率
0.00%
发文量
218
审稿时长
32 days
期刊介绍: BBA Molecular Basis of Disease addresses the biochemistry and molecular genetics of disease processes and models of human disease. This journal covers aspects of aging, cancer, metabolic-, neurological-, and immunological-based disease. Manuscripts focused on using animal models to elucidate biochemical and mechanistic insight in each of these conditions, are particularly encouraged. Manuscripts should emphasize the underlying mechanisms of disease pathways and provide novel contributions to the understanding and/or treatment of these disorders. Highly descriptive and method development submissions may be declined without full review. The submission of uninvited reviews to BBA - Molecular Basis of Disease is strongly discouraged, and any such uninvited review should be accompanied by a coverletter outlining the compelling reasons why the review should be considered.
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