{"title":"神经图像翻译的生成对抗网络。","authors":"Cassandra Czobit, Reza Samavi","doi":"10.1089/cmb.2024.0635","DOIUrl":null,"url":null,"abstract":"<p><p>Image-to-image translation has gained popularity in the medical field to transform images from one domain to another. Medical image synthesis via domain transformation is advantageous in its ability to augment an image dataset where images for a given class are limited. From the learning perspective, this process contributes to the data-oriented robustness of the model by inherently broadening the model's exposure to more diverse visual data and enabling it to learn more generalized features. In the case of generating additional neuroimages, it is advantageous to obtain unidentifiable medical data and augment smaller annotated datasets. This study proposes the development of a cycle-consistent generative adversarial network (CycleGAN) model for translating neuroimages from one field strength to another (e.g., 3 Tesla [T] to 1.5 T). This model was compared with a model based on a deep convolutional GAN model architecture. CycleGAN was able to generate the synthetic and reconstructed images with reasonable accuracy. The mapping function from the source (3 T) to the target domain (1.5 T) performed optimally with an average peak signal-to-noise ratio value of 25.69 ± 2.49 dB and a mean absolute error value of 2106.27 ± 1218.37. The codes for this study have been made publicly available in the following GitHub repository.<sup>a</sup>.</p>","PeriodicalId":15526,"journal":{"name":"Journal of Computational Biology","volume":" ","pages":""},"PeriodicalIF":1.4000,"publicationDate":"2024-12-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Generative Adversarial Networks for Neuroimage Translation.\",\"authors\":\"Cassandra Czobit, Reza Samavi\",\"doi\":\"10.1089/cmb.2024.0635\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Image-to-image translation has gained popularity in the medical field to transform images from one domain to another. Medical image synthesis via domain transformation is advantageous in its ability to augment an image dataset where images for a given class are limited. From the learning perspective, this process contributes to the data-oriented robustness of the model by inherently broadening the model's exposure to more diverse visual data and enabling it to learn more generalized features. In the case of generating additional neuroimages, it is advantageous to obtain unidentifiable medical data and augment smaller annotated datasets. This study proposes the development of a cycle-consistent generative adversarial network (CycleGAN) model for translating neuroimages from one field strength to another (e.g., 3 Tesla [T] to 1.5 T). This model was compared with a model based on a deep convolutional GAN model architecture. CycleGAN was able to generate the synthetic and reconstructed images with reasonable accuracy. The mapping function from the source (3 T) to the target domain (1.5 T) performed optimally with an average peak signal-to-noise ratio value of 25.69 ± 2.49 dB and a mean absolute error value of 2106.27 ± 1218.37. The codes for this study have been made publicly available in the following GitHub repository.<sup>a</sup>.</p>\",\"PeriodicalId\":15526,\"journal\":{\"name\":\"Journal of Computational Biology\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":1.4000,\"publicationDate\":\"2024-12-27\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Computational Biology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1089/cmb.2024.0635\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"BIOCHEMICAL RESEARCH METHODS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Computational Biology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1089/cmb.2024.0635","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
Generative Adversarial Networks for Neuroimage Translation.
Image-to-image translation has gained popularity in the medical field to transform images from one domain to another. Medical image synthesis via domain transformation is advantageous in its ability to augment an image dataset where images for a given class are limited. From the learning perspective, this process contributes to the data-oriented robustness of the model by inherently broadening the model's exposure to more diverse visual data and enabling it to learn more generalized features. In the case of generating additional neuroimages, it is advantageous to obtain unidentifiable medical data and augment smaller annotated datasets. This study proposes the development of a cycle-consistent generative adversarial network (CycleGAN) model for translating neuroimages from one field strength to another (e.g., 3 Tesla [T] to 1.5 T). This model was compared with a model based on a deep convolutional GAN model architecture. CycleGAN was able to generate the synthetic and reconstructed images with reasonable accuracy. The mapping function from the source (3 T) to the target domain (1.5 T) performed optimally with an average peak signal-to-noise ratio value of 25.69 ± 2.49 dB and a mean absolute error value of 2106.27 ± 1218.37. The codes for this study have been made publicly available in the following GitHub repository.a.
期刊介绍:
Journal of Computational Biology is the leading peer-reviewed journal in computational biology and bioinformatics, publishing in-depth statistical, mathematical, and computational analysis of methods, as well as their practical impact. Available only online, this is an essential journal for scientists and students who want to keep abreast of developments in bioinformatics.
Journal of Computational Biology coverage includes:
-Genomics
-Mathematical modeling and simulation
-Distributed and parallel biological computing
-Designing biological databases
-Pattern matching and pattern detection
-Linking disparate databases and data
-New tools for computational biology
-Relational and object-oriented database technology for bioinformatics
-Biological expert system design and use
-Reasoning by analogy, hypothesis formation, and testing by machine
-Management of biological databases